Factsheet for PGSC0003DMT400035056

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005280.2.1	Tomato	cytosol	64.16	70.07
PGSC0003DMT400035039	Potato	cytosol	56.93	63.0
VIT_01s0127g00680.t01	Wine grape	nucleus	39.76	40.62
CDY54287	Canola	nucleus	32.23	34.85
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	31.93	34.42
CDY44157	Canola	cytoskeleton, cytosol, nucleus	31.93	34.42
AT1G23550.1	Thale cress	nucleus	33.43	34.37
CDY25790	Canola	cytoskeleton, cytosol, nucleus	31.93	34.08
Bra012380.1-P	Field mustard	cytosol	30.72	32.9
KRH42972	Soybean	cytosol	28.01	32.75
Bra016219.1-P	Field mustard	nucleus	29.82	32.57
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	29.82	32.46
CDY57852	Canola	nucleus	30.12	32.26
CDY51640	Canola	cytoskeleton, cytosol, nucleus	29.52	32.24
CDY11593	Canola	nucleus	29.22	31.8
GSMUA_Achr5P03800_001	Banana	cytosol	15.36	30.0
GSMUA_Achr4P27510_001	Banana	cytosol	25.0	28.82
PGSC0003DMT400063250	Potato	nucleus	32.23	28.46
PGSC0003DMT400093081	Potato	nucleus	9.34	16.4
PGSC0003DMT400012725	Potato	cytosol	19.58	15.59
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	20.48	13.33
PGSC0003DMT400043197	Potato	nucleus	23.49	13.13
PGSC0003DMT400038368	Potato	nucleus	22.89	12.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400035056	EnsemblPlantsGene:PGSC0003DMG400013481	EntrezGene:102589049	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	GO:GO:0016757	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
PANTHER:PTHR32263	PANTHER:PTHR32263:SF8	PFAM:PF00644	PFAM:PF12174	PFscan:PS51059	PGSC:PGSC0003DMG400013481
SUPFAM:SSF56399	UniParc:UPI0002959605	UniProt:M1B1R5	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013481]

Coordinates

chr5:+:8782621..8786419

Molecular Weight (calculated)

37823.8 Da

IEP (calculated)

9.249

GRAVY (calculated)

-0.238

Length

332 amino acids

Sequence
(BLAST)

001: MDQLGDDDQV SMTIESREIL FSSDSEVESP SPTSNCHFRS LKRNGIIKLE ERDQEHDLIK AGFLSGMGQL GNEIEVVAIH KNSRSTILGQ ARSESFSIYS
101: EAMRKKCGGD ANIKYAWIGS SKDEICKIIS HGFSTIMEPK SGDCFGNGVH LYPTNIDGVF SAVEDENGLR HMLLCRVILG NTEVIEASSK QFQPTCQDFD
201: SGVDNYFAPK TYIIWPSNMN SHILPIFLVS FKGPLLLGNS SKIKKIPLNP TPRIKFSNLL RVLSNFLHPS RMVLISKIYE DFQVRIFIKK KLKIVTIKFI
301: TVKYFNKYLI TDYMNSIIYR KTRSQKWYLF RS

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.