Factsheet for Solyc05g005280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005290.2.1	Tomato	cytosol	52.63	68.67
PGSC0003DMT400035056	Potato	cytosol	70.07	64.16
VIT_01s0127g00680.t01	Wine grape	nucleus	44.08	41.23
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	37.5	37.01
CDY44157	Canola	cytoskeleton, cytosol, nucleus	37.5	37.01
KRH42972	Soybean	cytosol	34.54	36.97
CDY54287	Canola	nucleus	36.51	36.16
CDY25790	Canola	cytoskeleton, cytosol, nucleus	36.18	35.37
AT1G23550.1	Thale cress	nucleus	37.5	35.29
CDY51640	Canola	cytoskeleton, cytosol, nucleus	35.2	35.2
Bra012380.1-P	Field mustard	cytosol	35.2	34.52
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	33.88	33.77
Bra016219.1-P	Field mustard	nucleus	32.24	32.24
CDY57852	Canola	nucleus	32.24	31.61
CDY11593	Canola	nucleus	31.58	31.48
GSMUA_Achr5P03800_001	Banana	cytosol	17.11	30.59
GSMUA_Achr4P27510_001	Banana	cytosol	27.96	29.51
Solyc03g114360.2.1	Tomato	nucleus	36.18	29.33
Solyc01g057360.1.1	Tomato	cytosol	21.38	21.1
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	14.47	20.37
Solyc01g057370.1.1	Tomato	nucleus	20.39	19.68
Solyc08g005270.2.1	Tomato	nucleus	32.89	16.67
Solyc04g077090.1.1	Tomato	cytosol	23.68	16.25
Solyc04g077080.1.1	Tomato	cytosol	19.41	16.08
Solyc06g066330.2.1	Tomato	nucleus	28.95	14.81
Solyc08g076420.2.1	Tomato	nucleus	28.29	14.41
Solyc04g077100.2.1	Tomato	plastid	20.39	14.29

Protein Annotations

EnsemblPlants:Solyc05g005280.2.1	EnsemblPlantsGene:Solyc05g005280.2	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	GO:GO:0016757	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF8	PFAM:PF00644	PFAM:PF12174	PFscan:PS51059	SUPFAM:SSF56399	UniParc:UPI0002766C41
UniProt:K4BW59	MapMan:35.1	:	:	:	:

Description

Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:K4BW59]

Coordinates

chr5:-:227383..230131

Molecular Weight (calculated)

34191.1 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.278

Length

304 amino acids

Sequence
(BLAST)

001: MTIENHEMLF SSDSEVESPS PRTNYHFRSL KSNEVMKLEE GDQDHDLIKA GFLSGMGQLG NEIEVVAVHK NSCSTILGQA RSESFRIYSE AMRKKCSGDA
101: NIKYAWFGSS KDEICNIISH GFSTIMEPNY GDCFGNGVHL YPANIDGVFS AVEDENGLRH MLLCRVILGN TEVIEASSKQ FQPTCQDFDS GVDNYLAPKT
201: YIIWPSNMNS HILPNFLVSF KGPLSLGTSL KIKIPLKPTP RIKFSNLLRV LSNFLHPSRM VLITKKYEDF QKNKISKMIF VQKLRQIAGD TSLLKSCHDI
301: VSKH

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.