Factsheet for AT1G23550.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51640	Canola	cytoskeleton, cytosol, nucleus	65.02	69.08
CDY54287	Canola	nucleus	61.3	64.5
Bra012380.1-P	Field mustard	cytosol	60.99	63.55
CDY25790	Canola	cytoskeleton, cytosol, nucleus	60.68	63.02
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	57.89	61.31
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	56.04	58.77
CDY44157	Canola	cytoskeleton, cytosol, nucleus	56.04	58.77
VIT_01s0127g00680.t01	Wine grape	nucleus	39.94	39.69
PGSC0003DMT400035039	Potato	cytosol	35.91	38.67
Solyc05g005290.2.1	Tomato	cytosol	27.86	38.63
GSMUA_Achr5P03800_001	Banana	cytosol	19.81	37.65
Solyc05g005280.2.1	Tomato	cytosol	35.29	37.5
KRH42972	Soybean	cytosol	32.51	36.97
AT5G62520.1	Thale cress	nucleus	33.44	34.95
PGSC0003DMT400035056	Potato	cytosol	34.37	33.43
GSMUA_Achr4P27510_001	Banana	cytosol	29.72	33.33
AT3G47720.1	Thale cress	nucleus	29.1	29.75
AT1G32230.1	Thale cress	nucleus	27.24	14.94
AT2G35510.3	Thale cress	cytosol	23.22	13.2

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	EntrezGene:838965	ProteinID:AAC98011.1	ProteinID:AAF79590.1	ProteinID:AEE30402.1
ArrayExpress:AT1G23550	EnsemblPlantsGene:AT1G23550	RefSeq:AT1G23550	TAIR:AT1G23550	RefSeq:AT1G23550-TAIR-G	EnsemblPlants:AT1G23550.1
TAIR:AT1G23550.1	Unigene:At.49909	EMBL:BT022003	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0016740	InterPro:IPR012317	RefSeq:NP_173769.1	PFAM:PF12174	PO:PO:0000084	PO:PO:0000293
PO:PO:0001017	PO:PO:0001185	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009009	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS51059	PANTHER:PTHR32263
PANTHER:PTHR32263:SF8	InterPro:Poly(ADP-ribose)pol_cat_dom	UniProt:Q9ZUD9	InterPro:RST	Symbol:SRO2	SUPFAM:SSF56399
UniParc:UPI00000A0DB9	SEG:seg	:	:	:	:

Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]

Coordinates

chr1:+:8350728..8352791

Molecular Weight (calculated)

35604.2 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.302

Length

323 amino acids

Sequence
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.