Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32124 | Canola | nucleus | 55.46 | 59.43 |
| Bra017317.1-P | Field mustard | nucleus | 54.05 | 57.92 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 51.76 | 56.11 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 47.54 | 54.77 |
| CDY31694 | Canola | nucleus | 49.3 | 53.03 |
| AT1G32230.1 | Thale cress | nucleus | 54.93 | 52.97 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 38.2 | 37.22 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 37.85 | 36.88 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 33.27 | 35.46 |
| PGSC0003DMT400038368 | Potato | nucleus | 35.39 | 34.13 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 37.32 | 34.03 |
| Solyc08g005270.2.1 | Tomato | nucleus | 34.51 | 32.67 |
| GSMUA_Achr11P... | Banana | nucleus | 27.46 | 30.0 |
| PGSC0003DMT400043197 | Potato | nucleus | 31.34 | 29.97 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 22.01 | 29.83 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 29.4 | 29.51 |
| KRH74373 | Soybean | mitochondrion | 24.12 | 28.72 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 27.11 | 28.0 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 28.52 | 27.36 |
| Os10t0577800-01 | Rice | nucleus | 28.35 | 27.24 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 28.17 | 27.16 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 28.17 | 27.03 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 27.29 | 26.96 |
| KXG38822 | Sorghum | nucleus | 28.17 | 26.89 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 26.94 | 26.89 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 26.94 | 26.47 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 28.17 | 26.27 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 27.46 | 26.17 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 26.58 | 26.12 |
| Zm00001d014423_P002 | Maize | nucleus | 27.99 | 25.94 |
| Os03t0854800-03 | Rice | nucleus | 26.58 | 25.86 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 26.23 | 25.73 |
| AT1G70440.1 | Thale cress | cytoskeleton, cytosol, nucleus | 13.2 | 24.59 |
| AT5G62520.1 | Thale cress | nucleus | 13.2 | 24.27 |
| EER90487 | Sorghum | nucleus | 24.3 | 24.08 |
| AT1G23550.1 | Thale cress | nucleus | 13.2 | 23.22 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 22.18 | 21.84 |
| AT3G47720.1 | Thale cress | nucleus | 12.15 | 21.84 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 24.3 | 21.04 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | EntrezGene:818116 | ProteinID:AAC36170.2 | ProteinID:AEC09115.1 | ProteinID:ANM61534.1 |
| ArrayExpress:AT2G35510 | EnsemblPlantsGene:AT2G35510 | RefSeq:AT2G35510 | TAIR:AT2G35510 | RefSeq:AT2G35510-TAIR-G | EnsemblPlants:AT2G35510.3 |
| EMBL:AY056136 | EMBL:AY150402 | Unigene:At.26378 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 |
| GO:GO:0006970 | GO:GO:0006979 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009653 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0010102 | GO:GO:0016363 |
| GO:GO:0016740 | GO:GO:0048573 | InterPro:IPR004170 | InterPro:IPR012317 | RefSeq:NP_001323747.1 | RefSeq:NP_565806.1 |
| UniProt:O82289 | PFAM:PF00644 | PFAM:PF12174 | PFscan:PS50918 | PFscan:PS51059 | PANTHER:PTHR32263 |
| PANTHER:PTHR32263:SF4 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | Symbol:SRO1 | SUPFAM:SSF56399 | UniParc:UPI00000AC4BD |
| InterPro:WWE-dom | SEG:seg | : | : | : | : |
Description
SRO1Probable inactive poly [ADP-ribose] polymerase SRO1 [Source:UniProtKB/Swiss-Prot;Acc:O82289]
Coordinates
chr2:-:14916690..14920482
Molecular Weight (calculated)
64140.8 Da
IEP (calculated)
6.427
GRAVY (calculated)
-0.605
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKIVKVSD SSYKDGLGKK RKHPGNYTPY DSGRSYAKLQ WVLSPNSSTQ KLEKRRNLDG ENKVIVSENH VEKSLVRYFS YYKKTGVPKR VMFHENGEWI
101: DLPDHILCDI RNDLEAKRAT IEFNWCGRHF LLDFLHMYRL DLETGVKTQL AWIDIAGKCF FPETFDTLER DGCHHIRGED PEQHDQREIK LHIEIDVNSG
201: ELPRLNLNVV TDESGDNMDD FQAVQRSSNG PNDEASEDSC SRELDDAVEK WDKTETDRFS GVKPAEEELD KDAVKQMFAL GAATLGHVES LDVYQFSSEI
301: AKARLSLFQK QADITKKHRG DANIRYAWVP AKKEVLSAVM MHGLGVGGAF IKKSMYGVGV HAANCPYFSA RYCDIDDNGV RHMVLCRVIM GNMEPLRGDN
401: TQYFTGGEEY DNGVDDVESP KHYLIWNMNM NTHIYPEFVV SFKLSIPNAE GNILPTTQSR HESSGLTLEG PKGSPSNEPG RVSNGGSGSE KNSSSSRRPR
501: SPIMPFPLLF KAISSKIARK DMDLIIAGYQ ELREKKVSRK EFYKTLSMIV GDDDLLISTI TGLQRSLG
101: DLPDHILCDI RNDLEAKRAT IEFNWCGRHF LLDFLHMYRL DLETGVKTQL AWIDIAGKCF FPETFDTLER DGCHHIRGED PEQHDQREIK LHIEIDVNSG
201: ELPRLNLNVV TDESGDNMDD FQAVQRSSNG PNDEASEDSC SRELDDAVEK WDKTETDRFS GVKPAEEELD KDAVKQMFAL GAATLGHVES LDVYQFSSEI
301: AKARLSLFQK QADITKKHRG DANIRYAWVP AKKEVLSAVM MHGLGVGGAF IKKSMYGVGV HAANCPYFSA RYCDIDDNGV RHMVLCRVIM GNMEPLRGDN
401: TQYFTGGEEY DNGVDDVESP KHYLIWNMNM NTHIYPEFVV SFKLSIPNAE GNILPTTQSR HESSGLTLEG PKGSPSNEPG RVSNGGSGSE KNSSSSRRPR
501: SPIMPFPLLF KAISSKIARK DMDLIIAGYQ ELREKKVSRK EFYKTLSMIV GDDDLLISTI TGLQRSLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.