CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005336.1-P	Field mustard	cytosol, nucleus, plastid	83.33	83.97
CDX84199	Canola	cytosol, nucleus, plastid	71.21	76.27
CDY32124	Canola	nucleus	63.07	62.83
AT2G35510.3	Thale cress	cytosol	53.03	49.3
CDY60257	Canola	cytosol	30.11	48.62
CDY22597	Canola	nucleus	50.0	48.53
CDY67026	Canola	nucleus	49.24	47.27
CDY43007	Canola	nucleus	49.43	44.92
CDY41739	Canola	cytosol	43.37	41.64
VIT_02s0012g01920.t01	Wine grape	cytosol	33.33	33.02
KRH74370	Soybean	mitochondrion, nucleus, plastid	35.8	32.42
KRH39574	Soybean	mitochondrion, nucleus, plastid	35.61	32.25
PGSC0003DMT400038368	Potato	nucleus	34.85	31.24
Solyc08g005270.2.1	Tomato	nucleus	35.23	31.0
PGSC0003DMT400043197	Potato	nucleus	34.66	30.81
VIT_02s0012g01930.t01	Wine grape	nucleus	35.61	30.18
GSMUA_Achr4P19000_001	Banana	nucleus	22.73	28.64
CDY57852	Canola	nucleus	16.48	28.06
CDY11593	Canola	nucleus	15.91	27.54
GSMUA_Achr11P...	Banana	nucleus	27.08	27.5
GSMUA_Achr5P14120_001	Banana	nucleus	28.98	27.03
GSMUA_Achr2P18060_001	Banana	nucleus	28.79	26.43
CDY51640	Canola	cytoskeleton, cytosol, nucleus	15.15	26.32
CDY54287	Canola	nucleus	15.15	26.06
TraesCS5B01G557500.2	Wheat	nucleus	28.41	25.95
TraesCS5D01G551800.3	Wheat	nucleus	28.41	25.95
TraesCS4A01G321300.1	Wheat	nucleus	27.65	25.66
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	26.52	25.45
HORVU5Hr1G124010.1	Barley	nucleus	27.65	25.22
Os10t0577800-01	Rice	nucleus	28.22	25.21
CDY70596	Canola	cytosol	14.39	25.08
CDY25790	Canola	cytoskeleton, cytosol, nucleus	14.77	25.08
KXG38822	Sorghum	nucleus	27.84	24.71
TraesCS1D01G199200.1	Wheat	cytosol, nucleus, plastid	27.27	24.32
TraesCS1B01G210300.4	Wheat	peroxisome	27.08	24.28
EER90487	Sorghum	nucleus	26.33	24.26
TraesCS1A01G195400.4	Wheat	cytosol	27.08	24.16
Zm00001d030110_P001	Maize	mitochondrion, nucleus	27.08	23.99
Zm00001d014423_P002	Maize	nucleus	27.65	23.82
Os03t0854800-03	Rice	nucleus	26.33	23.8
CDY00302	Canola	nucleus	14.02	23.64
CDY44157	Canola	cytoskeleton, cytosol, nucleus	13.64	23.38
CDY30723	Canola	extracellular, golgi	15.72	23.31
CDY61348	Canola	nucleus	13.64	23.15
CDY66230	Canola	extracellular, golgi	15.53	23.03
HORVU1Hr1G050960.7	Barley	nucleus	26.52	22.99
KRH74373	Soybean	mitochondrion	20.27	22.43
HORVU0Hr1G014460.1	Barley	nucleus	23.86	21.84
Zm00001d012821_P003	Maize	extracellular, vacuole	24.81	19.97

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	GO:A0A078H2Q3	UniProt:A0A078H2Q3	EnsemblPlants:CDY31694	ProteinID:CDY31694
ProteinID:CDY31694.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740
EnsemblPlantsGene:GSBRNA2T00050309001	InterPro:IPR004170	InterPro:IPR012317	PFAM:PF12174	PFscan:PS50918	PFscan:PS51059
PANTHER:PTHR32263	PANTHER:PTHR32263:SF4	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	SUPFAM:SSF56399	UniParc:UPI0004EF2B85
InterPro:WWE-dom	SEG:seg	:	:	:	:

Description

BnaA05g08530DBnaA05g08530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2Q3]

Coordinates

chrLK032277:-:308898..311469

Molecular Weight (calculated)

58742.9 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.362

Length

528 amino acids

Sequence
(BLAST)

001: MESNFVKVLD SSFNDGPGKK RKHPDYCESG RSFAKLQCVL SPNGSTEKLN NGKKTNASED LSGKSLVRYY SYFKKTGVPK RVMFYENGEW TDLPDHVICS
101: IKNDLEAKRA VIEVNWSGRC FVLDFLHMHR LDLETGVRTH LAWIDIAGKC FFPEVYEKDC EEDQCEIKLH LEVDVNGVVQ PSLDESSEDS CSSIGTNMFS
201: GLKPADEEEV DVEAVKEKFV LGMATLGDVE LLNAYRFSGD ITKARQSLFN KQADITKSRR GDANIRYAWV PVKKKLLSSV MKHGLGVGGK FIKKSKYGVG
301: VHLTAADCPY FSATHCDIDE NGVRHMVLCR VIMGNMEPLG GGDRAQFFTG GEEYDNGVDN VLSPKHYLVW NMNVNTHVYP EFVVSFKLLS IPNAEGGLLS
401: ENSRLTLEGA KGSVSNGTGR VTNGDKSAGS ALMPYPLLFN AISSKVAQEE MDLITSDYQQ LREKKISREE FSRKLRVIVG DDDLLRTIIT ALQSLSSMKM
501: KPVTVSPEPS SWHAWGLPAL ELNNHDCV

Best Arabidopsis Sequence Match ( AT2G35510.3 )
(BLAST)

001: MEAKIVKVSD SSYKDGLGKK RKHPGNYTPY DSGRSYAKLQ WVLSPNSSTQ KLEKRRNLDG ENKVIVSENH VEKSLVRYFS YYKKTGVPKR VMFHENGEWI
101: DLPDHILCDI RNDLEAKRAT IEFNWCGRHF LLDFLHMYRL DLETGVKTQL AWIDIAGKCF FPETFDTLER DGCHHIRGED PEQHDQREIK LHIEIDVNSG
201: ELPRLNLNVV TDESGDNMDD FQAVQRSSNG PNDEASEDSC SRELDDAVEK WDKTETDRFS GVKPAEEELD KDAVKQMFAL GAATLGHVES LDVYQFSSEI
301: AKARLSLFQK QADITKKHRG DANIRYAWVP AKKEVLSAVM MHGLGVGGAF IKKSMYGVGV HAANCPYFSA RYCDIDDNGV RHMVLCRVIM GNMEPLRGDN
401: TQYFTGGEEY DNGVDDVESP KHYLIWNMNM NTHIYPEFVV SFKLSIPNAE GNILPTTQSR HESSGLTLEG PKGSPSNEPG RVSNGGSGSE KNSSSSRRPR
501: SPIMPFPLLF KAISSKIARK DMDLIIAGYQ ELREKKVSRK EFYKTLSMIV GDDDLLISTI TGLQRSLG

Arabidopsis Description

SRO1Probable inactive poly [ADP-ribose] polymerase SRO1 [Source:UniProtKB/Swiss-Prot;Acc:O82289]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.