CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24091
CDY25849
CDY45117
CDY60212

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	CDY24091	AT1G53510.1	21798944
AT5G62520.1	CDY25849	AT1G53510.1	21798944
AT5G62520.1	CDY45117	AT1G53510.1	21798944
AT5G62520.1	CDY60212	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30723	Canola	extracellular, golgi	89.89	89.89
CDY70596	Canola	cytosol	69.1	81.19
CDY61348	Canola	nucleus	63.76	72.99
CDY00302	Canola	nucleus	63.76	72.52
AT5G62520.1	Thale cress	nucleus	60.67	69.9
VIT_17s0000g08370.t01	Wine grape	nucleus	34.55	35.76
KRH57070	Soybean	cytosol	32.3	35.17
GSMUA_Achr5P03800_001	Banana	cytosol	16.57	34.71
KRH03292	Soybean	cytosol	32.58	34.52
KRH63531	Soybean	nucleus	30.62	33.03
CDY51640	Canola	cytoskeleton, cytosol, nucleus	28.09	32.89
CDY25790	Canola	cytoskeleton, cytosol, nucleus	28.65	32.8
CDY44157	Canola	cytoskeleton, cytosol, nucleus	28.37	32.79
Solyc03g114360.2.1	Tomato	nucleus	34.27	32.53
CDY54287	Canola	nucleus	27.81	32.25
PGSC0003DMT400063250	Potato	nucleus	32.87	31.12
CDY57852	Canola	nucleus	26.97	30.97
CDY11593	Canola	nucleus	26.12	30.49
GSMUA_Achr4P27510_001	Banana	cytosol	22.47	27.78
CDY60257	Canola	cytosol	19.94	21.71
CDX84199	Canola	cytosol, nucleus, plastid	21.63	15.62
CDY31694	Canola	nucleus	23.03	15.53
CDY32124	Canola	nucleus	22.75	15.28
CDY22597	Canola	nucleus	22.75	14.89
CDY67026	Canola	nucleus	22.47	14.55
CDY43007	Canola	nucleus	23.03	14.11
CDY41739	Canola	cytosol	21.63	14.0

Protein Annotations

EnsemblPlants:CDY66230	EnsemblPlantsGene:GSBRNA2T00052342001	Gene3D:3.90.228.10	GO:A0A078JID1	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF6	PFAM:PF12174	PFscan:PS51059	ProteinID:CDY66230	ProteinID:CDY66230.1	SUPFAM:SSF56399
UniParc:UPI0004EF35EF	UniProt:A0A078JID1	MapMan:35.1	:	:	:

Description

BnaAnng21860DBnaAnng21860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JID1]

Coordinates

chrLK035154:+:12489..14292

Molecular Weight (calculated)

40047.3 Da

IEP (calculated)

9.478

GRAVY (calculated)

-0.326

Length

356 amino acids

Sequence
(BLAST)

001: MQKPQITVKL KAVQVSSSVN LSLYIHTLGA QVLVLSYNSK HTKKRFNAKD YFLPMDYSEQ EERSTISESG SSNSYDQQQP SFADEHGLME LLEGDRAYDL
101: IYRNCKSALG DQCDLLSILR NGFATVGSRA KLKAFQVFQE AVEMKHVGEG GGKARVKYGW CAVKKTELKS VLEYGFSQPR NDGCYGRGLY LSPDNALLEC
201: LKDSAAESED GMRFLLLSRV ILGKSEIVPL GSTQSCPSSP EFDSGVDDLA SPSKYIVWST HMNTHVLPEF LVCIKAPFNI NRSAKRLRSP WMAFPVLIKA
301: LSKFLPPSQI LIIQKHYKDQ QNRRISRSEL IQRVRHITGD KLLVHIIKAF GHKVQH

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.