CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13458
KRH21856

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	KRH13458	AT1G53510.1	21798944
AT5G62520.1	KRH21856	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57070	Soybean	cytosol	44.24	44.65
KRH03292	Soybean	cytosol	44.24	43.45
GSMUA_Achr5P03800_001	Banana	cytosol	20.3	39.41
Bra010096.1-P	Field mustard	nucleus	36.06	38.02
CDY00302	Canola	nucleus	36.06	38.02
AT5G62520.1	Thale cress	nucleus	35.45	37.86
VIT_17s0000g08370.t01	Wine grape	nucleus	39.39	37.79
CDY61348	Canola	nucleus	35.15	37.3
CDY70596	Canola	cytosol	33.03	35.97
Bra029254.1-P	Field mustard	cytosol	32.73	35.64
AT3G47720.1	Thale cress	nucleus	33.03	34.49
PGSC0003DMT400063250	Potato	nucleus	38.79	34.04
Solyc03g114360.2.1	Tomato	nucleus	38.48	33.87
GSMUA_Achr4P27510_001	Banana	cytosol	27.58	31.6
CDY30723	Canola	extracellular, golgi	33.33	30.9
KRH42972	Soybean	cytosol	26.36	30.63
CDY66230	Canola	extracellular, golgi	33.03	30.62
KRH39574	Soybean	mitochondrion, nucleus, plastid	26.36	14.92
KRH74370	Soybean	mitochondrion, nucleus, plastid	26.06	14.75
KRH74373	Soybean	mitochondrion	10.0	6.92

Protein Annotations

EMBL:ACUP02002697	EnsemblPlants:KRH63531	EnsemblPlantsGene:GLYMA_04G183100	EntrezGene:100791977	Gene3D:3.90.228.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
PANTHER:PTHR32263	PANTHER:PTHR32263:SF6	PFAM:PF12174	PFscan:PS51059	ProteinID:KRH63531	ProteinID:KRH63531.1
SEG:seg	SUPFAM:SSF56399	UniParc:UPI000233A804	UniProt:I1JX73	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr4:+:45042749..45045673

Molecular Weight (calculated)

36577.8 Da

IEP (calculated)

9.511

GRAVY (calculated)

-0.396

Length

330 amino acids

Sequence
(BLAST)

001: MELTFPHQDE DDSVVSDCES GVSGSGVVVA PPPPPPQQQQ RGFFVRLGEG DVVHDLIKTR FIRGLGMLGP KTEVVSVRRN ACSDVVSQAR LHSFHAHARA
101: VARLRGGGNH ANVKYAWYRT NGEDDVNDIV SQGFGFAHGP KLVLSPDDAP LQSARGCGVG KDGVRHALLC RVILGRSEIV RDNTEHCYPS CEEYDSGVDS
201: FSGPTKYIIW SNRMNTHVLP AYVVSFRVSS FKGMEKSEEE PLRPTSPWMP FPTLISALSK VLPPCDIALI SKFYKDKKDK KILRHELIQR VREIAGDKLL
301: VAAIKSYRDN KKKPSFLQSR SKNGLATRIK

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.