Factsheet for Bra010096.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra038128.1-P
Bra039676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	Bra038128.1-P	AT1G53510.1	21798944
AT5G62520.1	Bra039676.1-P	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00302	Canola	nucleus	100.0	100.0
CDY61348	Canola	nucleus	94.25	94.86
Bra029254.1-P	Field mustard	cytosol	72.84	75.25
AT5G62520.1	Thale cress	nucleus	69.65	70.55
VIT_17s0000g08370.t01	Wine grape	nucleus	39.94	36.34
KRH63531	Soybean	nucleus	38.02	36.06
KRH57070	Soybean	cytosol	37.06	35.47
KRH03292	Soybean	cytosol	36.42	33.93
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	32.91	33.44
Bra012380.1-P	Field mustard	cytosol	32.91	33.23
GSMUA_Achr5P03800_001	Banana	cytosol	17.57	32.35
PGSC0003DMT400063250	Potato	nucleus	38.34	31.91
Bra016219.1-P	Field mustard	nucleus	30.99	31.91
Solyc03g114360.2.1	Tomato	nucleus	37.38	31.2
GSMUA_Achr4P27510_001	Banana	cytosol	26.52	28.82
Bra017317.1-P	Field mustard	nucleus	24.6	14.53
Bra005336.1-P	Field mustard	cytosol, nucleus, plastid	23.32	13.93
Bra035511.1-P	Field mustard	cytosol	24.6	13.8
Bra023252.1-P	Field mustard	nucleus	20.77	13.49

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	EnsemblPlantsGene:Bra010096	EnsemblPlants:Bra010096.1	EnsemblPlants:Bra010096.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	UniProt:M4D0U7	PFAM:PF12174
PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF6	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	SUPFAM:SSF56399
UniParc:UPI000253F6E9	SEG:seg	:	:	:	:

Description

AT5G62520 (E=2e-134) SRO5 | SRO5 (SIMILAR TO RCD ONE 5); NAD+ ADP-ribosyltransferase

Coordinates

chrA06:+:19383958..19385124

Molecular Weight (calculated)

34878.8 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.395

Length

313 amino acids

Sequence
(BLAST)

001: MDYAGTEFQA SLDSEQEGST VSESGSCDSY EQPRPSFADE HGLMELLEGD KAYDLIYRNC KSGLGDQCQL LSILRNGFRT IGSRAKLKTF QVFQEAVEMK
101: HVGEGGGGGG SRVKYGWCAV TKTELKSILE YGFSQPSNDG SYGRGLYLSP DNALLECVKG SAAESEDGMR FLLLSRVILG KSEVVPRGST QSCPSSPEFD
201: SGVDNLSSPK KYIVWSTHMN THVLPEFLVC LKTPFNFNSP RRLRSPWMPF PLLIKALSKF LPPPQIVIIQ KHYRDQQNMR ISRSELIQRV RRITGDKLLV
301: HIIKAVGNKV QQQ

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.