CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13458
KRH21856

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	KRH13458	AT1G53510.1	21798944
AT5G62520.1	KRH21856	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03292	Soybean	cytosol	82.57	80.36
KRH63531	Soybean	nucleus	44.65	44.24
GSMUA_Achr5P03800_001	Banana	cytosol	21.71	41.76
VIT_17s0000g08370.t01	Wine grape	nucleus	43.73	41.57
CDY70596	Canola	cytosol	35.17	37.95
AT5G62520.1	Thale cress	nucleus	35.78	37.86
Bra029254.1-P	Field mustard	cytosol	34.86	37.62
CDY61348	Canola	nucleus	35.47	37.3
CDY00302	Canola	nucleus	35.47	37.06
Bra010096.1-P	Field mustard	nucleus	35.47	37.06
GSMUA_Achr4P27510_001	Banana	cytosol	29.05	32.99
PGSC0003DMT400063250	Potato	nucleus	37.31	32.45
KRH42972	Soybean	cytosol	28.13	32.39
CDY66230	Canola	extracellular, golgi	35.17	32.3
CDY30723	Canola	extracellular, golgi	34.86	32.02
Solyc03g114360.2.1	Tomato	nucleus	36.7	32.0
AT3G47720.1	Thale cress	nucleus	30.89	31.96
KRH39574	Soybean	mitochondrion, nucleus, plastid	26.91	15.09
KRH74370	Soybean	mitochondrion, nucleus, plastid	26.3	14.75
KRH74373	Soybean	mitochondrion	12.54	8.6

Protein Annotations

EMBL:ACUP02002809	EnsemblPlants:KRH57070	EnsemblPlantsGene:GLYMA_05G037700	EntrezGene:100813999	Gene3D:3.90.228.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
ncoils:Coil	PANTHER:PTHR32263	PANTHER:PTHR32263:SF6	PFAM:PF12174	PFscan:PS51059	ProteinID:KRH57070
ProteinID:KRH57070.1	SUPFAM:SSF56399	UniParc:UPI0002339E31	UniProt:I1K008	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr5:-:3334270..3337647

Molecular Weight (calculated)

36486.7 Da

IEP (calculated)

9.011

GRAVY (calculated)

-0.318

Length

327 amino acids

Sequence
(BLAST)

001: MDPLGKRPAA EDDSLISDCE SGVSAGDTPP PFVENADLVR TRFVRGLVAH CFKPEVLAVR RNVCSSVMAL ARQHSFHVFA RAVAELRGGN ANVKFAWYGA
101: SSKEEINDII QHGFGHAHSN GLRLSPQDSP LESVKSSVVD EDGLRHLLLC RVILGKTEVV PRGSYQCRSS SQEFDSGVDD LSNPKEYVIW CNQINTHVLP
201: EYVLSFRLPS PLKGIVKIGE PLRPSSPWMA FPALISMLSK ILPPSEVASI AKFHKDYREK RISRHELIQK VRVIAGDKLL LSVIKSFRAK KIPANFKDDK
301: AKEWQADSQQ LERNDCSYGS SISYYRK

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.