Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62520.1 | CDY24091 | AT1G53510.1 | 21798944 |
| AT5G62520.1 | CDY25849 | AT1G53510.1 | 21798944 |
| AT5G62520.1 | CDY45117 | AT1G53510.1 | 21798944 |
| AT5G62520.1 | CDY60212 | AT1G53510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029254.1-P | Field mustard | cytosol | 94.06 | 94.06 |
| CDY00302 | Canola | nucleus | 75.58 | 73.16 |
| CDY61348 | Canola | nucleus | 74.59 | 72.67 |
| CDY30723 | Canola | extracellular, golgi | 83.5 | 71.07 |
| CDY66230 | Canola | extracellular, golgi | 81.19 | 69.1 |
| AT5G62520.1 | Thale cress | nucleus | 69.97 | 68.61 |
| VIT_17s0000g08370.t01 | Wine grape | nucleus | 40.26 | 35.47 |
| KRH57070 | Soybean | cytosol | 37.95 | 35.17 |
| KRH03292 | Soybean | cytosol | 38.61 | 34.82 |
| GSMUA_Achr5P03800_001 | Banana | cytosol | 18.81 | 33.53 |
| KRH63531 | Soybean | nucleus | 35.97 | 33.03 |
| CDY51640 | Canola | cytoskeleton, cytosol, nucleus | 33.0 | 32.89 |
| CDY44157 | Canola | cytoskeleton, cytosol, nucleus | 33.33 | 32.79 |
| CDY25790 | Canola | cytoskeleton, cytosol, nucleus | 32.34 | 31.51 |
| CDY54287 | Canola | nucleus | 31.68 | 31.27 |
| PGSC0003DMT400063250 | Potato | nucleus | 38.61 | 31.12 |
| Solyc03g114360.2.1 | Tomato | nucleus | 38.28 | 30.93 |
| CDY11593 | Canola | nucleus | 30.36 | 30.16 |
| CDY57852 | Canola | nucleus | 30.03 | 29.35 |
| GSMUA_Achr4P27510_001 | Banana | cytosol | 26.4 | 27.78 |
| CDY60257 | Canola | cytosol | 23.1 | 21.41 |
| CDY31694 | Canola | nucleus | 25.08 | 14.39 |
| CDY32124 | Canola | nucleus | 24.75 | 14.15 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 22.77 | 14.0 |
| CDY22597 | Canola | nucleus | 24.42 | 13.6 |
| CDY67026 | Canola | nucleus | 24.09 | 13.27 |
| CDY41739 | Canola | cytosol | 23.43 | 12.91 |
| CDY43007 | Canola | nucleus | 24.42 | 12.74 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | GO:A0A078JYK1 | UniProt:A0A078JYK1 | EnsemblPlants:CDY70596 | ProteinID:CDY70596 |
| ProteinID:CDY70596.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00004628001 |
| InterPro:IPR012317 | PFAM:PF12174 | PFscan:PS51059 | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF6 | InterPro:Poly(ADP-ribose)pol_cat_dom |
| InterPro:RST | SUPFAM:SSF56399 | UniParc:UPI0004EF079B | : | : | : |
Description
BnaAnng34290DBnaAnng34290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYK1]
Coordinates
chrLK042631:-:664..2293
Molecular Weight (calculated)
34122.8 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.413
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSEQEERS TISESGSSNS YDQQQPSFAD EHGLMELLEG DRAYDLIYRN CKSALGDQCE LLSILRNGFG NVGSRAKLKA FQVFQEAVEM KHAGEEGGGK
101: ARVKYGWCAV KKTELKSVLE YGFSQPRNDG CYGRGLYLSP DNALLECLKD SAAESEDGMR FLLLSRVILG KSEVVPRGST QSCPSSPEFD SGVDDLASPS
201: KYIVWSTHMN THVLPEFLVC IKAPFNFNRS VKRLRSPWMA FPVLIKALSK FLPPTQILII QKHYKDQQSR RISRSELIQR VRHITGDKLL VHIIKAFGHK
301: VQH
101: ARVKYGWCAV KKTELKSVLE YGFSQPRNDG CYGRGLYLSP DNALLECLKD SAAESEDGMR FLLLSRVILG KSEVVPRGST QSCPSSPEFD SGVDDLASPS
201: KYIVWSTHMN THVLPEFLVC IKAPFNFNRS VKRLRSPWMA FPVLIKALSK FLPPTQILII QKHYKDQQSR RISRSELIQR VRHITGDKLL VHIIKAFGHK
301: VQH
001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH
Arabidopsis Description
SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.