CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13458
KRH21856

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	KRH13458	AT1G53510.1	21798944
AT5G62520.1	KRH21856	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57070	Soybean	cytosol	80.36	82.57
KRH63531	Soybean	nucleus	43.45	44.24
VIT_17s0000g08370.t01	Wine grape	nucleus	42.56	41.57
GSMUA_Achr5P03800_001	Banana	cytosol	19.94	39.41
CDY70596	Canola	cytosol	34.82	38.61
Bra029254.1-P	Field mustard	cytosol	34.82	38.61
AT5G62520.1	Thale cress	nucleus	34.23	37.22
CDY00302	Canola	nucleus	33.93	36.42
Bra010096.1-P	Field mustard	nucleus	33.93	36.42
CDY61348	Canola	nucleus	33.63	36.33
KRH42972	Soybean	cytosol	28.27	33.45
Solyc03g114360.2.1	Tomato	nucleus	36.9	33.07
PGSC0003DMT400063250	Potato	nucleus	36.61	32.71
CDY66230	Canola	extracellular, golgi	34.52	32.58
CDY30723	Canola	extracellular, golgi	34.23	32.3
AT3G47720.1	Thale cress	nucleus	29.46	31.33
GSMUA_Achr4P27510_001	Banana	cytosol	26.79	31.25
KRH39574	Soybean	mitochondrion, nucleus, plastid	27.68	15.95
KRH74370	Soybean	mitochondrion, nucleus, plastid	27.68	15.95
KRH74373	Soybean	mitochondrion	13.1	9.22

Protein Annotations

EMBL:ACUP02010342	EnsemblPlants:KRH03292	EnsemblPlantsGene:GLYMA_17G089400	EntrezGene:100784311	Gene3D:3.90.228.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
PANTHER:PTHR32263	PANTHER:PTHR32263:SF6	PFAM:PF12174	PFscan:PS51059	ProteinID:KRH03292	ProteinID:KRH03292.1
SUPFAM:SSF56399	UniParc:UPI0002950A3D	UniProt:K7MKQ4	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr17:+:6954450..6957797

Molecular Weight (calculated)

37340.5 Da

IEP (calculated)

9.136

GRAVY (calculated)

-0.356

Length

336 amino acids

Sequence
(BLAST)

001: MDPPIHHPLG KRPAAEDDSV ISDCESGVSG GDTAAGFVPA DENADLVRTR FVRGLAAHGL KPEVLAVGRN ACSSVMAQAR QHSFHVFARA VAKLRDGNAN
101: VKFAWYGASS KEEISDIVQN GFFGHAHGNG LRLFPQDSPL ESVKSSVVDK DGLRHLLLCR VILGKTELVP RDSNQCRSSS EEFDSGVDDL SNPKEYVIWC
201: NQINTHVLPE YVLSFRFPSP LKGHVKIGEP LRPSSPWMAF PALISVLSKI LPPPDIAYIA KFHKDYREKR ISRHELIQKV RVIAGDKLLF SVIKSFRAKK
301: IPASFKANKG NEWQAESQQL ERYDCSYGSS INYYRK

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.