Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G62520.1 | Thale cress | nucleus | 45.57 | 46.6 |
| KRH63531 | Soybean | nucleus | 34.49 | 33.03 |
| GSMUA_Achr5P03800_001 | Banana | cytosol | 17.09 | 31.76 |
| VIT_17s0000g08370.t01 | Wine grape | nucleus | 34.49 | 31.69 |
| KRH57070 | Soybean | cytosol | 31.96 | 30.89 |
| PGSC0003DMT400063250 | Potato | nucleus | 36.08 | 30.32 |
| Solyc03g114360.2.1 | Tomato | nucleus | 35.44 | 29.87 |
| KRH03292 | Soybean | cytosol | 31.33 | 29.46 |
| AT1G23550.1 | Thale cress | nucleus | 29.75 | 29.1 |
| AT1G70440.1 | Thale cress | cytoskeleton, cytosol, nucleus | 27.53 | 28.52 |
| GSMUA_Achr4P27510_001 | Banana | cytosol | 21.52 | 23.61 |
| AT1G32230.1 | Thale cress | nucleus | 22.78 | 12.22 |
| AT2G35510.3 | Thale cress | cytosol | 21.84 | 12.15 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | EntrezGene:823926 | ProteinID:AEE78322.1 | ArrayExpress:AT3G47720 | EnsemblPlantsGene:AT3G47720 |
| RefSeq:AT3G47720 | TAIR:AT3G47720 | RefSeq:AT3G47720-TAIR-G | EnsemblPlants:AT3G47720.1 | TAIR:AT3G47720.1 | Unigene:At.66517 |
| EMBL:BX824791 | ProteinID:CAB41855.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0016740 |
| InterPro:IPR012317 | RefSeq:NP_190356.2 | PFAM:PF12174 | PFscan:PS51059 | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF6 |
| InterPro:Poly(ADP-ribose)pol_cat_dom | UniProt:Q9STU1 | InterPro:RST | Symbol:SRO4 | SUPFAM:SSF56399 | UniParc:UPI000034EFCE |
| SEG:seg | : | : | : | : | : |
Description
SRO4Probable inactive poly [ADP-ribose] polymerase SRO4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STU1]
Coordinates
chr3:+:17592558..17594132
Molecular Weight (calculated)
35422.2 Da
IEP (calculated)
7.643
GRAVY (calculated)
-0.370
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSKTEETP INEEQGSTNS SESRSNEELF SDCDQQHSSI ANEFGLTELP KDDKVYELIY RHCQSKLTSH LSNQFEIVSI LKNGFQTPLG QAKLKAFQIY
101: AESVAKKSGS CCGNKAAVAE AARVKYGCCG VEKEELKAIL MYGFSNNALC LSPDNAPLQC MIDPSSSCNE DGISFLLFSR IIMGKSEVVC STSQSYPSSM
201: EFDSGVDSLT SPNKYIIWST HMNTHVLPEF VVCIKTPSIL KRKNPKSPWI SFPVLINSIS KFLNQSQIRL IHKHYKEHQD RRISRCELIQ RLRSITGDSL
301: LVQIIKSVGQ KVHKDT
101: AESVAKKSGS CCGNKAAVAE AARVKYGCCG VEKEELKAIL MYGFSNNALC LSPDNAPLQC MIDPSSSCNE DGISFLLFSR IIMGKSEVVC STSQSYPSSM
201: EFDSGVDSLT SPNKYIIWST HMNTHVLPEF VVCIKTPSIL KRKNPKSPWI SFPVLINSIS KFLNQSQIRL IHKHYKEHQD RRISRCELIQ RLRSITGDSL
301: LVQIIKSVGQ KVHKDT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.