Factsheet for PGSC0003DMT400063250

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018188
PGSC0003DMT400054750

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	PGSC0003DMT400018188	AT1G53510.1	21798944
AT5G62520.1	PGSC0003DMT400054750	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114360.2.1	Tomato	nucleus	81.65	81.87
VIT_17s0000g08370.t01	Wine grape	nucleus	38.3	41.86
PGSC0003DMT400035039	Potato	cytosol	31.12	39.0
Bra029254.1-P	Field mustard	cytosol	31.38	38.94
KRH63531	Soybean	nucleus	34.04	38.79
CDY70596	Canola	cytosol	31.12	38.61
Bra010096.1-P	Field mustard	nucleus	31.91	38.34
CDY00302	Canola	nucleus	31.91	38.34
CDY61348	Canola	nucleus	31.38	37.94
AT5G62520.1	Thale cress	nucleus	31.12	37.86
KRH57070	Soybean	cytosol	32.45	37.31
KRH03292	Soybean	cytosol	32.71	36.61
GSMUA_Achr5P03800_001	Banana	cytosol	16.49	36.47
AT3G47720.1	Thale cress	nucleus	30.32	36.08
CDY66230	Canola	extracellular, golgi	31.12	32.87
CDY30723	Canola	extracellular, golgi	31.12	32.87
PGSC0003DMT400035056	Potato	cytosol	28.46	32.23
GSMUA_Achr4P27510_001	Banana	cytosol	23.4	30.56
PGSC0003DMT400093081	Potato	nucleus	9.31	18.52
PGSC0003DMT400012725	Potato	cytosol	18.35	16.55
PGSC0003DMT400038368	Potato	nucleus	23.67	15.11
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	20.48	15.1
PGSC0003DMT400043197	Potato	nucleus	21.81	13.8

Protein Annotations

EntrezGene:102597186	Gene3D:3.90.228.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	InterPro:IPR012317	UniProt:M1CAB8	PFAM:PF12174	EnsemblPlantsGene:PGSC0003DMG400024600	PGSC:PGSC0003DMG400024600
EnsemblPlants:PGSC0003DMT400063250	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF6	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST
SUPFAM:SSF56399	UniParc:UPI0002949060	RefSeq:XP_006345058.1	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024600]

Coordinates

chr3:-:54317167..54319695

Molecular Weight (calculated)

41507.8 Da

IEP (calculated)

8.306

GRAVY (calculated)

-0.446

Length

376 amino acids

Sequence
(BLAST)

001: MENFVKPQFF SFLREEAAAA VQRYSPHHKF MAHSGFGNQF AESTSSSADD VQDPEVSDSE SSVVGSVHEE RSSGLMRIDE GDKIYGIISN KFLSGLGCFG
101: LSTEITAIHK ETCSSFIKQA KLQSFLIFSK AVEKKCGGNA NVKYAWFGAS NDEINNIFSH GFSHSSNNGA YSQAICLSPD DNSHDCLQAA VPDKNGVRHL
201: LLCRVILGKT EVVHPGSGQC HPSSEEYDTG VDNLSSPRKY IVWSTHMNSY VFPEFMVSFR VSSHAKESQR NTVPVQNPKS PWITFPALIS ALSKFLPPQT
301: VKLITKYHND HKGRKITRRD LIQQVRKLAG DELLTAIIKS CKNKQQSKGS TGNSSSTSSI NFEQRDGRCC ACQKSC

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.