Factsheet for Solyc03g114360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g062080.2.1
Solyc10g007500.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62520.1	Solyc07g062080.2.1	AT1G53510.1	21798944
AT5G62520.1	Solyc10g007500.2.1	AT1G53510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063250	Potato	nucleus	81.87	81.65
VIT_17s0000g08370.t01	Wine grape	nucleus	37.87	41.28
KRH63531	Soybean	nucleus	33.87	38.48
Bra029254.1-P	Field mustard	cytosol	30.93	38.28
CDY70596	Canola	cytosol	30.93	38.28
AT5G62520.1	Thale cress	nucleus	31.2	37.86
CDY00302	Canola	nucleus	31.2	37.38
Bra010096.1-P	Field mustard	nucleus	31.2	37.38
CDY61348	Canola	nucleus	30.93	37.3
Solyc05g005290.2.1	Tomato	cytosol	22.93	36.91
KRH03292	Soybean	cytosol	33.07	36.9
KRH57070	Soybean	cytosol	32.0	36.7
Solyc05g005280.2.1	Tomato	cytosol	29.33	36.18
GSMUA_Achr5P03800_001	Banana	cytosol	16.27	35.88
AT3G47720.1	Thale cress	nucleus	29.87	35.44
CDY66230	Canola	extracellular, golgi	32.53	34.27
CDY30723	Canola	extracellular, golgi	32.0	33.71
GSMUA_Achr4P27510_001	Banana	cytosol	22.4	29.17
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	13.33	23.15
Solyc01g057370.1.1	Tomato	nucleus	16.27	19.37
Solyc01g057360.1.1	Tomato	cytosol	15.73	19.16
Solyc04g077090.1.1	Tomato	cytosol	20.0	16.93
Solyc08g005270.2.1	Tomato	nucleus	26.4	16.5
Solyc04g077080.1.1	Tomato	cytosol	15.73	16.08
Solyc08g076420.2.1	Tomato	nucleus	25.07	15.75
Solyc04g077100.2.1	Tomato	plastid	17.07	14.75
Solyc06g066330.2.1	Tomato	nucleus	20.8	13.13

Protein Annotations

EnsemblPlants:Solyc03g114360.2.1	EnsemblPlantsGene:Solyc03g114360.2	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263	PANTHER:PTHR32263:SF6
PFAM:PF12174	PFscan:PS51059	SEG:seg	SUPFAM:SSF56399	UniParc:UPI00027681D3	UniProt:K4BKT8
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:64368999..64371205

Molecular Weight (calculated)

41319.7 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.401

Length

375 amino acids

Sequence
(BLAST)

001: MENFVKPQFF SFLREEAAAV VQRYSPHHKF MAQSGFGNQF AESTSSSADD VQDPEVSDSE SSVVGSVHEE RSSGLMRIDE GDKIYGIISN KFLSGLGCFG
101: LSTEITAIQK ETCSSFVKQA KLQSFLIFSK AVEKKCSGNA NVKYAWFGGS KDEISNIFSH GFSCRSNNGA YSQAICLSPD DNSHDCLQAA VPDKNGVRHL
201: LLCRVILGKT EVVHPGSGQC HPSSEEYDTG VDNLSSPRKF IVWSTHMNSY VFPEFMVSFR VSSHAKESQR NAVPIQNPKS PWITFPALIS ALSKFLPPQT
301: VKLITKYHND HKGRKITRRD LIQQVRKLAG DELLTAIIKS CKNKQSKGST GNSSSTSSIN FEQRDGGCCA CHRSC

Best Arabidopsis Sequence Match ( AT5G62520.1 )
(BLAST)

001: MDYVRTQVEA VFDDSEQDGS TISESGSCDS SSDRSFADEL GLMELLEGDK AHDLIYRNCK SGLGDQCQIL SVLRNGFRNV GSRAKLKTFQ VFQEAVQMKH
101: GGDGGAKVKY GWCSVSKHEL KTIFEYGFSE PLRNDGSFGR GLYLSPDNSP LDCLKDSASE SEDGMRFLLL CRVLLGKSEI VPQGSTRSCP SSPEFDSGVD
201: DLVSTKKYIV WSTHMNTHVL PEFLVCIKAP FNLTRSPKRL RSPWMAFPVL IKALSKFLPP SQILVIQKHY KDQQNRRITR SELIQRVRSI TGDKLLVHII
301: KACGHKVQH

Arabidopsis Description

SRO5Probable inactive poly [ADP-ribose] polymerase SRO5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.