Factsheet for Solyc04g077080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077090.1.1	Tomato	cytosol	90.74	75.17
Solyc01g057370.1.1	Tomato	nucleus	58.31	67.94
PGSC0003DMT400012725	Potato	cytosol	75.75	66.67
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	24.8	42.13
Solyc04g077100.2.1	Tomato	plastid	44.96	38.02
Solyc01g057360.1.1	Tomato	cytosol	26.7	31.82
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	30.25	29.06
VIT_18s0001g08290.t01	Wine grape	plastid	32.97	24.95
TraesCS4B01G235000.1	Wheat	nucleus	29.43	24.6
TraesCS4A01G059400.1	Wheat	nucleus	29.43	24.6
TraesCS4D01G236400.2	Wheat	nucleus	28.88	24.15
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	30.79	23.69
Zm00001d028307_P001	Maize	nucleus	26.98	22.97
Solyc05g005290.2.1	Tomato	cytosol	14.17	22.32
EER92605	Sorghum	nucleus	26.7	21.83
HORVU4Hr1G065800.1	Barley	nucleus, plastid	29.97	21.28
Os03t0230300-01	Rice	nucleus	26.7	21.17
Zm00001d047993_P001	Maize	cytosol, nucleus, plastid	25.61	20.98
Solyc05g005280.2.1	Tomato	cytosol	16.08	19.41
Solyc08g076420.2.1	Tomato	nucleus	28.07	17.25
Solyc03g114360.2.1	Tomato	nucleus	16.08	15.73
Solyc08g005270.2.1	Tomato	nucleus	25.34	15.5
Solyc06g066330.2.1	Tomato	nucleus	24.8	15.32

Protein Annotations

EnsemblPlants:Solyc04g077080.1.1	EnsemblPlantsGene:Solyc04g077080.1	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	GO:GO:0016757	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5
PFAM:PF00644	PFscan:PS51059	SUPFAM:SSF56399	UniParc:UPI0002766253	UniProt:K4BUE5	MapMan:35.1

Description

Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:K4BUE5]

Coordinates

chr4:+:62032679..62033862

Molecular Weight (calculated)

42207.9 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.343

Length

367 amino acids

Sequence
(BLAST)

001: MMSKTAIVSG NIKDGKLKLR NEVLPLGRWP DHAQLLYQNR HNFKESGKPL SFKMYKDGSW MDFEKHAMDV LISAFVSGKA IIEVETEAGF KLLIDFYRMF
101: GIDLDTGNEL PISWIDVNEN NFIPKIFIDD LENENPMIEK RGTEVGSSSQ LVIANPTELT PPKWARTRSM REEEYAYQTV KGYLLSSRSG VTITGIHQCM
201: ISGVREQVFK DNMEIVTKAR RNPKVVLAWY GTSSKNVDAI MYRGFELTRL EQGHRGIGIY LSPLESPQIS EMMSDVDENG EKHMILCRVI LGNPEKVELG
301: SQQMFSSNLD NFDTGIDDLI HPKLYVVWYH NMKTHILPEC IVSYKLDRHM PGKHRSFSLF ISFNYFW

Best Arabidopsis Sequence Match ( AT2G35510.2 )
(BLAST)

001: MEAKIVKVSD SSYKDGLGKK RKHPGNYTPY DSGRSYAKLQ WVLSPNSSTQ KLEKRRNLDG ENKVIVSENH VEKSLVRYFS YYKKTGVPKR VMFHENGEWI
101: DLPDHILCDI RNDLEAKRAT IEFNWCGRHF LLDFLHMYRL DLETGVKTQL AWIDIAGKCF FPETFDTLER DGCHHIRGED PEQHDQREIK LHIEIDVNSG
201: ELPRLNLNVV TDESGDNMDD FQAVQRSSNG PNDEASEDSC SRELDDAVEK WDKTETDRFS GVKPAEEELD KDAVKQMFAL GAATLGHVES LDVYQFSSEI
301: AKARLSLFQK QADITKKHRG DANIRYAWVP AKKEVLSAVM MHGLGVGGAF IKKSMYGVGV HAANCPYFSA RYCDIDDNGV RHMVLCRVIM GNMEPLRGDN
401: TQYFTGGEEY DNGVDDVESP KHYLIWNMNM NTHIYPEFVV SFKLSIPNAE GDYHLLFLL

Arabidopsis Description

SRO1Probable inactive poly [ADP-ribose] polymerase SRO1 [Source:UniProtKB/Swiss-Prot;Acc:O82289]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.