Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G236400.2 | Wheat | nucleus | 96.58 | 96.58 |
| TraesCS4B01G235000.1 | Wheat | nucleus | 94.76 | 94.76 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 82.69 | 70.21 |
| Os03t0230300-01 | Rice | nucleus | 66.29 | 62.85 |
| Zm00001d028307_P001 | Maize | nucleus | 55.81 | 56.84 |
| EER92605 | Sorghum | nucleus | 57.86 | 56.57 |
| Zm00001d047993_P001 | Maize | cytosol, nucleus, plastid | 55.58 | 54.46 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 38.5 | 35.43 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 30.3 | 34.82 |
| Solyc01g057370.1.1 | Tomato | nucleus | 21.64 | 30.16 |
| Solyc04g077080.1.1 | Tomato | cytosol | 24.6 | 29.43 |
| Solyc04g077070.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 14.35 | 29.17 |
| PGSC0003DMT400012725 | Potato | cytosol | 26.88 | 28.3 |
| Solyc04g077090.1.1 | Tomato | cytosol | 27.33 | 27.09 |
| PGSC0003DMT400093081 | Potato | nucleus | 11.16 | 25.93 |
| VIT_18s0001g08290.t01 | Wine grape | plastid | 28.25 | 25.57 |
| Solyc01g057360.1.1 | Tomato | cytosol | 17.77 | 25.32 |
| Solyc04g077100.2.1 | Tomato | plastid | 24.15 | 24.42 |
| PGSC0003DMT400012724 | Potato | cytosol, nucleus, plastid | 28.25 | 24.31 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 24.6 | 18.98 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 23.01 | 17.06 |
| TraesCS7A01G409200.2 | Wheat | nucleus | 23.69 | 12.12 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G059400.1 | EnsemblPlantsGene:TraesCS4A01G059400 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF5 |
| PFAM:PF00644 | PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4A:+:55572806..55575003
Molecular Weight (calculated)
47683.7 Da
IEP (calculated)
9.770
GRAVY (calculated)
-0.320
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFSGDVKQA IPRPAVAFGG VGSAGPSPLL RGWREFRRSG APVRFLCFED GAWADVEGEA AVPLRRAFLD GRVVAEAAYG GREFLFDFLR MVRIDTGTAQ
101: EVAMGWIDDR GACFFPVPDS GRKRKRGEPE LEDGASSGVE EGSDESSDTV ESGRVGKAAR GTWGRAVRLV ETDKFYQVVK KLFLSGIAPR VGGGVAITAV
201: HKVAQGPRCR AFQQQGQLLA AARGADGGNA KFAWYGAPSA DVAAAVEHGF GRTNSQVLGH RAHGDGVHLS PPQSPFASAM LANADENGEA HIVLCRVLMG
301: RPEAIPAGSS QLHPSSDNYD SAVDNMQNPQ WYLVWSKDMN TRILPEYVVS FKCPSLRQMQ GSSEATSQLK KPSPVARDMF PTLLAEIQRF VPSSKLQTLQ
401: GTYNRFKKGQ MKKDQFIRFL RAFIGDRVLT AVAKKLRGY
101: EVAMGWIDDR GACFFPVPDS GRKRKRGEPE LEDGASSGVE EGSDESSDTV ESGRVGKAAR GTWGRAVRLV ETDKFYQVVK KLFLSGIAPR VGGGVAITAV
201: HKVAQGPRCR AFQQQGQLLA AARGADGGNA KFAWYGAPSA DVAAAVEHGF GRTNSQVLGH RAHGDGVHLS PPQSPFASAM LANADENGEA HIVLCRVLMG
301: RPEAIPAGSS QLHPSSDNYD SAVDNMQNPQ WYLVWSKDMN TRILPEYVVS FKCPSLRQMQ GSSEATSQLK KPSPVARDMF PTLLAEIQRF VPSSKLQTLQ
401: GTYNRFKKGQ MKKDQFIRFL RAFIGDRVLT AVAKKLRGY
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.