Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077080.1.1 | Tomato | cytosol | 67.94 | 58.31 |
| Solyc04g077090.1.1 | Tomato | cytosol | 77.46 | 55.08 |
| PGSC0003DMT400012725 | Potato | cytosol | 61.9 | 46.76 |
| Solyc04g077070.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 26.35 | 38.43 |
| Solyc04g077100.2.1 | Tomato | plastid | 45.4 | 32.95 |
| Solyc01g057360.1.1 | Tomato | cytosol | 29.84 | 30.52 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 29.84 | 24.61 |
| VIT_18s0001g08290.t01 | Wine grape | plastid | 34.6 | 22.47 |
| TraesCS4A01G059400.1 | Wheat | nucleus | 30.16 | 21.64 |
| TraesCS4B01G235000.1 | Wheat | nucleus | 29.84 | 21.41 |
| TraesCS4D01G236400.2 | Wheat | nucleus | 29.52 | 21.18 |
| Zm00001d028307_P001 | Maize | nucleus | 28.57 | 20.88 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 31.43 | 20.75 |
| EER92605 | Sorghum | nucleus | 29.21 | 20.49 |
| Solyc05g005280.2.1 | Tomato | cytosol | 19.68 | 20.39 |
| Solyc05g005290.2.1 | Tomato | cytosol | 14.92 | 20.17 |
| Zm00001d047993_P001 | Maize | cytosol, nucleus, plastid | 28.25 | 19.87 |
| Os03t0230300-01 | Rice | nucleus | 27.3 | 18.57 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 29.84 | 18.18 |
| Solyc03g114360.2.1 | Tomato | nucleus | 19.37 | 16.27 |
| Solyc06g066330.2.1 | Tomato | nucleus | 25.4 | 13.47 |
| Solyc08g076420.2.1 | Tomato | nucleus | 25.4 | 13.4 |
| Solyc08g005270.2.1 | Tomato | nucleus | 24.76 | 13.0 |
Protein Annotations
| EnsemblPlants:Solyc01g057370.1.1 | EnsemblPlantsGene:Solyc01g057370.1 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | GO:GO:0016757 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF5 |
| PFAM:PF00644 | PFscan:PS51059 | SUPFAM:SSF56399 | UniParc:UPI0002761B23 | UniProt:K4AVU8 | MapMan:35.1 |
Description
Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:K4AVU8]
Coordinates
chr1:-:60777717..60779055
Molecular Weight (calculated)
35928.8 Da
IEP (calculated)
5.806
GRAVY (calculated)
-0.456
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKDGSWMDF EKHAMDVLIS AFVSGKAMIE VEMGAGFKLL IDFYRMFGID LDTGNELPIS WIDVNGNNFI PKIFIDDSEN ENPMIEKRGT EVGSSSQLVF
101: ANPTESAPPK WARTRSMREE DTGEQVFKDN VEMVTKARGN PKVVLAWYGT SSKNVDAIMH RGFELTRLEQ GHRGIGIYLS PLESPQISEM MSDVDENGEK
201: HMILCRVILG NPEKVELGSQ QLFSSNLDNF DTGIDDLNNP KLYVVWYHNM KTHILPECIV SYKLDHHMPG QQNCGAHTED RWCRLLFKLP NFLPLSGQSS
301: SAQKFHKRYR SYCSR
101: ANPTESAPPK WARTRSMREE DTGEQVFKDN VEMVTKARGN PKVVLAWYGT SSKNVDAIMH RGFELTRLEQ GHRGIGIYLS PLESPQISEM MSDVDENGEK
201: HMILCRVILG NPEKVELGSQ QLFSSNLDNF DTGIDDLNNP KLYVVWYHNM KTHILPECIV SYKLDHHMPG QQNCGAHTED RWCRLLFKLP NFLPLSGQSS
301: SAQKFHKRYR SYCSR
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.