Factsheet for Solyc08g076420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038368	Potato	nucleus	88.27	89.47
Solyc06g066330.2.1	Tomato	nucleus	44.89	45.12
Solyc08g005270.2.1	Tomato	nucleus	36.68	36.5
GSMUA_Achr11P...	Banana	nucleus	31.49	36.15
GSMUA_Achr4P19000_001	Banana	nucleus	23.79	33.89
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	31.16	33.82
GSMUA_Achr2P18060_001	Banana	nucleus	32.5	33.74
GSMUA_Achr5P14120_001	Banana	nucleus	30.49	32.16
TraesCS4A01G321300.1	Wheat	nucleus	29.65	31.11
HORVU5Hr1G124010.1	Barley	nucleus	29.98	30.92
TraesCS1D01G199200.1	Wheat	cytosol, nucleus, plastid	30.49	30.74
Os10t0577800-01	Rice	nucleus	30.32	30.63
TraesCS1A01G195400.4	Wheat	cytosol	30.15	30.41
TraesCS1B01G210300.4	Wheat	peroxisome	29.98	30.39
TraesCS5B01G557500.2	Wheat	nucleus	28.81	29.76
TraesCS5D01G551800.3	Wheat	nucleus	28.81	29.76
HORVU1Hr1G050960.7	Barley	nucleus	29.82	29.23
Solyc05g005280.2.1	Tomato	cytosol	14.41	28.29
KXG38822	Sorghum	nucleus	28.14	28.24
Solyc04g077080.1.1	Tomato	cytosol	17.25	28.07
Zm00001d030110_P001	Maize	mitochondrion, nucleus	27.97	28.02
Os03t0854800-03	Rice	nucleus	27.3	27.91
Solyc05g005290.2.1	Tomato	cytosol	10.89	27.9
EER90487	Sorghum	nucleus	26.3	27.4
Zm00001d014423_P002	Maize	nucleus	27.81	27.08
Solyc04g077090.1.1	Tomato	cytosol	19.6	26.41
HORVU0Hr1G014460.1	Barley	nucleus	25.13	26.0
Solyc01g057370.1.1	Tomato	nucleus	13.4	25.4
Solyc03g114360.2.1	Tomato	nucleus	15.75	25.07
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	9.05	25.0
Zm00001d012821_P003	Maize	extracellular, vacuole	26.97	24.54
Solyc01g057360.1.1	Tomato	cytosol	12.4	24.03
Solyc04g077100.2.1	Tomato	plastid	15.75	21.66

Protein Annotations

EnsemblPlants:Solyc08g076420.2.1	EnsemblPlantsGene:Solyc08g076420.2	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	InterPro:IPR004170	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	InterPro:WWE-dom
InterPro:WWE_dom_sf	PANTHER:PTHR32263	PANTHER:PTHR32263:SF4	PFAM:PF12174	PFscan:PS50918	PFscan:PS51059
SUPFAM:SSF117839	SUPFAM:SSF56399	UniParc:UPI000276BEBF	UniProt:K4CN05	MapMan:35.1	:

Description

No Description!

Coordinates

chr8:-:60428964..60437672

Molecular Weight (calculated)

67311.3 Da

IEP (calculated)

7.481

GRAVY (calculated)

-0.441

Length

597 amino acids

Sequence
(BLAST)

001: MESNWVEVLD NDRRTADVDS KSKVASQYVA RIVGAGTEKL EELSFQPNCS SFYSTLGKRK RTVEGETNCR SHLRKSTVKN YSNFIKSGLP QRVLYHQNGE
101: WNDFPQDIVR IVKEDFRAKK AVIEVNFGGF HVILDILYMV QVNLVTGLEK PIAWIDEAGG CFFPDLCLVS CKAHDNIEIQ SQRTEGFSAA EPDRATNIKL
201: HLEIDINGPN NCKLDEGMEE SNVRVKRIKV DPLKDNQQFA VDQKSYPKME VVAENQQDQE SLSPILEDTL KLVDAESVKT MFVKGMNTIY MVDIVKISQC
301: SSKYMRNRLE LFEKQAEITQ KYRGKSNVRH AWLAASKEVV STIMNYGLMH GACGQKTKLG VGVHLIAQDC ASKSAASCDI DENGIRYMVL CRVILGNEEL
401: LHFGSHQSYP SNERYDSGVD DLESPTHYTV WNMNMNTHIY PEYVVSFRMS SGAEGAPIKE ESRLDVSRVT SQGSEERLDL NKLPTELGNC QQYQFVRNIQ
501: QSHGVGVGTN KSPKSPWMPF SMLFGAISAK VSPKDLKLVH AHYDLFRSKK ISRNDFIRRL RLIVGDQLLK STITNLQCKP PSASPCFLNV PSGESNC

Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.