CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028307_P001	Maize	nucleus	67.48	70.3
TraesCS4D01G236400.2	Wheat	nucleus	56.79	58.09
TraesCS4A01G059400.1	Wheat	nucleus	56.57	57.86
TraesCS4B01G235000.1	Wheat	nucleus	55.68	56.95
Os03t0230300-01	Rice	nucleus	56.35	54.64
HORVU4Hr1G065800.1	Barley	nucleus, plastid	51.45	44.68
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	35.19	33.12
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	28.06	32.98
Solyc01g057370.1.1	Tomato	nucleus	20.49	29.21
Solyc04g077080.1.1	Tomato	cytosol	21.83	26.7
VIT_18s0001g08290.t01	Wine grape	plastid	28.51	26.39
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	12.69	26.39
PGSC0003DMT400012725	Potato	cytosol	23.61	25.42
Solyc04g077090.1.1	Tomato	cytosol	24.72	25.06
Solyc04g077100.2.1	Tomato	plastid	23.61	24.42
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	27.62	24.31
Solyc01g057360.1.1	Tomato	cytosol	16.48	24.03
PGSC0003DMT400093081	Potato	nucleus	8.69	20.63
KXG38822	Sorghum	nucleus	25.17	18.99
EER90487	Sorghum	nucleus	23.83	18.67
EES15499	Sorghum	nucleus	26.28	13.05

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	EntrezGene:8085247	UniProt:C5WRQ9	EnsemblPlants:EER92605	ProteinID:EER92605
ProteinID:EER92605.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317
InterPro:IPR016126	PFAM:PF12174	PFscan:PS51059	PFscan:PS51311	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5
InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	EnsemblPlantsGene:SORBI_3001G447100	SUPFAM:SSF56399	InterPro:Secretoglobin	UniParc:UPI0001A827A1
RefSeq:XP_002465607.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:72417803..72421276

Molecular Weight (calculated)

48708.7 Da

IEP (calculated)

9.181

GRAVY (calculated)

-0.389

Length

449 amino acids

Sequence
(BLAST)

001: MDFSSGDVKA AIMRPAAAAA AAAAESGTST LLRGWQEFRR SGAPARFLCF EDGKWVDVTG EAVPRLRRAF QERRAMADAS CGGKAYLFDF LRMVRIDEAT
101: GDETGLAWID HRGGCFFPAP AADCGGGERN KRKRDDGAPA AADEAESSSG VDERSGESYP GPGVGVDAKR RKAWAGNAAA RLEENDKYYH VVSKLFLSYG
201: MAQRGAAITA VRKIANGART AAFQEQAQLL ANARGAAAGT AKFAWYGASA DDVAAVVDQG FVTNNATRLG ARKHGDGMHL SPPQCPYTSA MLAKADGSGE
301: AHIVLCRVLM GRPEAVPAGS SQSCPSSHNY DSAVDRLENP QWYVVWNKDM NTRILPEYVV SFKCSKLQQM QESSEATSKL KKRSPVVRDM FPRLLAEIQK
401: IVPDKCDLLQ ETYSSFKMGQ IKKDQFIRFL RSYVGDKVLT TVAKKLRGC

Best Arabidopsis Sequence Match ( AT1G32230.3 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.