Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P03800_001 | Banana | cytosol | 34.03 | 57.65 |
| VIT_01s0127g00680.t01 | Wine grape | nucleus | 35.76 | 31.69 |
| PGSC0003DMT400035039 | Potato | cytosol | 31.6 | 30.33 |
| AT1G23550.1 | Thale cress | nucleus | 33.33 | 29.72 |
| KRH42972 | Soybean | cytosol | 28.82 | 29.23 |
| Solyc05g005290.2.1 | Tomato | cytosol | 23.61 | 29.18 |
| VIT_17s0000g08370.t01 | Wine grape | nucleus | 34.72 | 29.07 |
| KRH57070 | Soybean | cytosol | 32.99 | 29.05 |
| CDY51640 | Canola | cytoskeleton, cytosol, nucleus | 30.21 | 28.62 |
| Bra024609.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 30.21 | 28.25 |
| CDY44157 | Canola | cytoskeleton, cytosol, nucleus | 30.21 | 28.25 |
| AT1G70440.1 | Thale cress | cytoskeleton, cytosol, nucleus | 29.86 | 28.2 |
| CDY54287 | Canola | nucleus | 29.86 | 28.01 |
| Solyc05g005280.2.1 | Tomato | cytosol | 29.51 | 27.96 |
| CDY11593 | Canola | nucleus | 29.51 | 27.87 |
| CDY57852 | Canola | nucleus | 29.86 | 27.74 |
| KRH63531 | Soybean | nucleus | 31.6 | 27.58 |
| Bra012380.1-P | Field mustard | cytosol | 29.51 | 27.42 |
| CDY25790 | Canola | cytoskeleton, cytosol, nucleus | 29.51 | 27.33 |
| Bra016219.1-P | Field mustard | nucleus | 28.82 | 27.3 |
| KRH03292 | Soybean | cytosol | 31.25 | 26.79 |
| Bra010096.1-P | Field mustard | nucleus | 28.82 | 26.52 |
| CDY00302 | Canola | nucleus | 28.82 | 26.52 |
| CDY70596 | Canola | cytosol | 27.78 | 26.4 |
| Bra029254.1-P | Field mustard | cytosol | 27.78 | 26.4 |
| CDY61348 | Canola | nucleus | 28.47 | 26.37 |
| PGSC0003DMT400035056 | Potato | cytosol | 28.82 | 25.0 |
| AT5G62520.1 | Thale cress | nucleus | 26.04 | 24.27 |
| PGSC0003DMT400063250 | Potato | nucleus | 30.56 | 23.4 |
| CDY30723 | Canola | extracellular, golgi | 27.78 | 22.47 |
| CDY66230 | Canola | extracellular, golgi | 27.78 | 22.47 |
| Solyc03g114360.2.1 | Tomato | nucleus | 29.17 | 22.4 |
| AT3G47720.1 | Thale cress | nucleus | 23.61 | 21.52 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 27.08 | 16.35 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 21.53 | 16.23 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 23.26 | 15.99 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 26.04 | 13.64 |
| GSMUA_Achr11P... | Banana | nucleus | 23.96 | 13.27 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 26.04 | 13.25 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 25.0 | 12.52 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P27510_001 | EnsemblPlants:GSMUA_Achr4T27510_001 | EnsemblPlantsGene:GSMUA_Achr4G27510_001 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0016740 | GO:GO:0016757 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST |
| PANTHER:PTHR32263 | PFAM:PF00644 | PFAM:PF12174 | PFscan:PS51059 | SUPFAM:SSF56399 | UniParc:UPI000296F5F1 |
| UniProt:M0SSL3 | MapMan:35.1 | : | : | : | : |
Description
RCD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G27510_001]
Coordinates
chr4:+:26315517..26316647
Molecular Weight (calculated)
32220.8 Da
IEP (calculated)
8.710
GRAVY (calculated)
-0.297
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRPATGGF AGGDAMIKVD KDSDEFVIIQ HRFYTNMGST VPHCPLVELH RILYSTPTGR ARLEAFNRQV DAMKQKHGGN PNERFAFYEA SKRNVQRIIN
101: DGFDVSAAPE DGGYFGIALY LSPEPCAINS VMSATVDEKG LRHVLLCRVI LGGAEEVVRG SGQSRPSSGN FDSAVDNHRS PTRYIIWYPD VQSRVLPLYV
201: LSVEVDFRNR VLHQALVSRP TSPWMSIGDL LSALSARLPH STMCQLWRLH NDKMEKKITR EQMVCSIREI TGDQMLLDAM RTILGRKQ
101: DGFDVSAAPE DGGYFGIALY LSPEPCAINS VMSATVDEKG LRHVLLCRVI LGGAEEVVRG SGQSRPSSGN FDSAVDNHRS PTRYIIWYPD VQSRVLPLYV
201: LSVEVDFRNR VLHQALVSRP TSPWMSIGDL LSALSARLPH STMCQLWRLH NDKMEKKITR EQMVCSIREI TGDQMLLDAM RTILGRKQ
001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN
Arabidopsis Description
SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.