CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	99.35	99.35
CDY51640	Canola	cytoskeleton, cytosol, nucleus	77.27	78.29
CDY54287	Canola	nucleus	59.42	59.61
AT1G23550.1	Thale cress	nucleus	58.77	56.04
CDY25790	Canola	cytoskeleton, cytosol, nucleus	56.49	55.95
CDY11593	Canola	nucleus	51.62	52.13
CDY57852	Canola	nucleus	50.65	50.32
Solyc05g005280.2.1	Tomato	cytosol	37.01	37.5
VIT_01s0127g00680.t01	Wine grape	nucleus	39.29	37.23
PGSC0003DMT400035039	Potato	cytosol	36.04	37.0
GSMUA_Achr5P03800_001	Banana	cytosol	19.48	35.29
Solyc05g005290.2.1	Tomato	cytosol	25.97	34.33
KRH42972	Soybean	cytosol	31.49	34.15
CDY70596	Canola	cytosol	32.79	33.33
CDY00302	Canola	nucleus	33.44	32.91
CDY61348	Canola	nucleus	32.79	32.48
PGSC0003DMT400035056	Potato	cytosol	34.42	31.93
GSMUA_Achr4P27510_001	Banana	cytosol	28.25	30.21
CDY30723	Canola	extracellular, golgi	33.12	28.65
CDY66230	Canola	extracellular, golgi	32.79	28.37
CDY60257	Canola	cytosol	24.35	22.94
CDY67026	Canola	nucleus	27.92	15.64
CDY22597	Canola	nucleus	27.6	15.62
CDY43007	Canola	nucleus	27.27	14.46
CDX84199	Canola	cytosol, nucleus, plastid	22.08	13.79
CDY31694	Canola	nucleus	23.38	13.64
CDY41739	Canola	cytosol	23.7	13.27
CDY32124	Canola	nucleus	22.73	13.21

Protein Annotations

EnsemblPlants:CDY44157	EnsemblPlantsGene:GSBRNA2T00079620001	Gene3D:3.90.228.10	GO:A0A078I282	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF8	PFAM:PF12174	PFscan:PS51059	ProteinID:CDY44157	ProteinID:CDY44157.1	SEG:seg
SUPFAM:SSF56399	UniParc:UPI0004EE27CA	UniProt:A0A078I282	MapMan:35.1	:	:

Description

BnaA09g30950DBnaA09g30950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I282]

Coordinates

chrLK032580:+:213348..214509

Molecular Weight (calculated)

33506.6 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.227

Length

308 amino acids

Sequence
(BLAST)

001: MAAAHVEIED QSSVSTELDN GEILEPLSDA DSSSASSGSA ILLGQGNQEH DVIKACFLSG LGAAFAVDTT VESVRKTSTE EVAARARYVA FRIFTEAMAR
101: KNGGDPNVKY GWFAGSREEI ERIVSYGFSS REIDDGSHGI GVHLVPSKCS LFAAVGAEPD GEGVRHLLLC RVLLGRPEQI DAGSTQSHPS SGEFDCAVDD
201: LQEPRKYIVW SSNMNSYILP SYIVSFKSPR LRVIGRGGPP PSSPWVSFTA VVSVLSKFLD ASRMSLIKKT FDDFRKGKIP RDQLVRKMRQ VAGDDLLAQI
301: IKNHKDRV

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.