CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31694	Canola	nucleus	76.27	71.21
CDY32124	Canola	nucleus	67.34	62.64
AT2G35510.3	Thale cress	cytosol	54.77	47.54
CDY60257	Canola	cytosol	30.63	46.18
CDY22597	Canola	nucleus	49.49	44.85
CDY67026	Canola	nucleus	49.29	44.18
CDY43007	Canola	nucleus	48.28	40.96
CDY41739	Canola	cytosol	44.62	40.0
KRH74370	Soybean	mitochondrion, nucleus, plastid	36.71	31.05
KRH39574	Soybean	mitochondrion, nucleus, plastid	36.11	30.53
VIT_02s0012g01920.t01	Wine grape	cytosol	32.66	30.21
Solyc08g005270.2.1	Tomato	nucleus	36.71	30.17
PGSC0003DMT400038368	Potato	nucleus	34.48	28.86
VIT_02s0012g01930.t01	Wine grape	nucleus	35.9	28.41
CDY57852	Canola	nucleus	17.65	28.06
CDY11593	Canola	nucleus	16.84	27.21
PGSC0003DMT400043197	Potato	nucleus	32.25	26.77
GSMUA_Achr11P...	Banana	nucleus	27.59	26.15
CDY25790	Canola	cytoskeleton, cytosol, nucleus	16.23	25.72
CDY54287	Canola	nucleus	15.82	25.41
GSMUA_Achr4P19000_001	Banana	nucleus	21.3	25.06
CDY51640	Canola	cytoskeleton, cytosol, nucleus	15.42	25.0
GSMUA_Achr5P14120_001	Banana	nucleus	28.6	24.91
TraesCS5B01G557500.2	Wheat	nucleus	28.8	24.57
TraesCS5D01G551800.3	Wheat	nucleus	28.8	24.57
Os10t0577800-01	Rice	nucleus	29.41	24.53
TraesCS4A01G321300.1	Wheat	nucleus	27.99	24.25
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	26.98	24.18
GSMUA_Achr2P18060_001	Banana	nucleus	28.19	24.17
HORVU5Hr1G124010.1	Barley	nucleus	27.99	23.83
KXG38822	Sorghum	nucleus	27.99	23.19
TraesCS1D01G199200.1	Wheat	cytosol, nucleus, plastid	27.38	22.8
TraesCS1A01G195400.4	Wheat	cytosol	27.38	22.8
Os03t0854800-03	Rice	nucleus	26.98	22.77
CDY70596	Canola	cytosol	14.0	22.77
TraesCS1B01G210300.4	Wheat	peroxisome	27.18	22.75
Zm00001d014423_P002	Maize	nucleus	28.19	22.68
KRH74373	Soybean	mitochondrion	21.91	22.64
CDY00302	Canola	nucleus	14.2	22.36
Zm00001d030110_P001	Maize	mitochondrion, nucleus	26.98	22.32
CDY30723	Canola	extracellular, golgi	16.02	22.19
HORVU1Hr1G050960.7	Barley	nucleus	27.38	22.17
CDY44157	Canola	cytoskeleton, cytosol, nucleus	13.79	22.08
CDY61348	Canola	nucleus	13.79	21.86
EER90487	Sorghum	nucleus	25.36	21.82
CDY66230	Canola	extracellular, golgi	15.62	21.63
HORVU0Hr1G014460.1	Barley	nucleus	23.73	20.28
Zm00001d012821_P003	Maize	extracellular, vacuole	25.15	18.9

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	GO:A0A078D752	EnsemblPlants:CDX84199	ProteinID:CDX84199	ProteinID:CDX84199.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00141250001	InterPro:IPR004170
InterPro:IPR012317	PFAM:PF12174	PFscan:PS50918	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF4
InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	SUPFAM:SSF56399	UniParc:UPI0004EE83E5	InterPro:WWE-dom	SEG:seg

Description

BnaC04g09610D

Coordinates

chrLK031836:+:721850..724111

Molecular Weight (calculated)

55140.9 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.423

Length

493 amino acids

Sequence
(BLAST)

001: MESNIVKVLD SSFKDGPGKK RKHPDYCESG RSFAKLQCVL SPTEKLNSGN KVNASENLSG KSLVRYYSYF KKTGVPKRVM IYENGEWTDL PDHVIWAIRN
101: DLEAKRAAIE VNWSGRCFVL DFLHMHRLDL ETGVRTHLAW IDIAGKCFFP QVYERDREED QCEIKLHLEV DVNGVVQPSL NESSEDSCSL GTNILSSVKP
201: DEEEEVNIDA VKEKFVLGMA TLGHVELLDA YRFSGDTAKD RQSLFNKQAD ITKLRRGDAN IRYAWVPVKK KLLSSVMKHG LGVCGEFIKK SKYGVGVHLT
301: AANCPYFSAT HCDIDENGVR HMVLCRVIMG NMEPLGGGRG QFFAGGEEYD NGVDNVSSPK HYLVWNMNVN THVISPFTLK KGDLLSENSR LTLKGTKGSV
401: SNGTGRVTNG NKSAGSALMP YPLLFNAMSS RVTQEEMDLI TADYQQLREK KISREEFSRK LRVVVGDDDL LRTTITSLQS LPSMKMKPVT GGY

Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.