CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016219.1-P	Field mustard	nucleus	91.61	93.42
CDY11593	Canola	nucleus	85.81	87.21
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	55.16	56.07
CDY25790	Canola	cytoskeleton, cytosol, nucleus	54.52	54.34
CDY54287	Canola	nucleus	53.23	53.75
CDY51640	Canola	cytoskeleton, cytosol, nucleus	50.32	51.32
CDY44157	Canola	cytoskeleton, cytosol, nucleus	50.32	50.65
PGSC0003DMT400035039	Potato	cytosol	33.55	34.67
GSMUA_Achr5P03800_001	Banana	cytosol	18.71	34.12
Solyc05g005290.2.1	Tomato	cytosol	25.48	33.91
VIT_01s0127g00680.t01	Wine grape	nucleus	35.48	33.85
KRH42972	Soybean	cytosol	30.65	33.45
Solyc05g005280.2.1	Tomato	cytosol	31.61	32.24
CDY00302	Canola	nucleus	31.61	31.31
CDY61348	Canola	nucleus	30.97	30.87
PGSC0003DMT400035056	Potato	cytosol	32.26	30.12
CDY70596	Canola	cytosol	29.35	30.03
GSMUA_Achr4P27510_001	Banana	cytosol	27.74	29.86
CDY30723	Canola	extracellular, golgi	31.61	27.53
CDY66230	Canola	extracellular, golgi	30.97	26.97
CDY60257	Canola	cytosol	25.81	24.46
CDX84199	Canola	cytosol, nucleus, plastid	28.06	17.65
CDY31694	Canola	nucleus	28.06	16.48
CDY32124	Canola	nucleus	27.74	16.23
CDY22597	Canola	nucleus	28.39	16.18
CDY67026	Canola	nucleus	28.39	16.0
CDY43007	Canola	nucleus	27.74	14.8
CDY41739	Canola	cytosol	24.19	13.64

Protein Annotations

EnsemblPlants:CDY57852	EnsemblPlantsGene:GSBRNA2T00022761001	Gene3D:3.90.228.10	GO:A0A078IZH8	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF8	PFAM:PF12174	PFscan:PS51059	ProteinID:CDY57852	ProteinID:CDY57852.1	SUPFAM:SSF56399
UniParc:UPI0004EDB043	UniProt:A0A078IZH8	MapMan:35.1	:	:	:

Description

BnaA07g38830DBnaA07g38830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZH8]

Coordinates

chrLK033610:-:51997..53227

Molecular Weight (calculated)

34643.6 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.294

Length

310 amino acids

Sequence
(BLAST)

001: MMMAAQVEIV DNGEIIDSLS HHASGDYSST ILLREENHEY DVVKNCFLSG MGLHAAETTV VSVRKTSAQR ITAKAKLAAS NVFAEAMKRK NGGDANVRYG
101: WYSGSKEEIE RIVSYGFSSS EVEKFEKDDR SHGVGVHFLH HTCSKAAAIL GEADEEGIEH LLLCRLILGK PERIIVGSKQ TYPSSSEYDC GVDNLENPRK
201: YVIWSCNMNS YILPSHVVSF KSPTLRGILI HYKTYGGGGL GRARSPCVSF PILMSILSKS LDRPRMNVIL TTYVDFRKGK VRREQLIRKM REVVGDELLL
301: DIIKNHRNSD

Best Arabidopsis Sequence Match ( AT1G70440.1 )
(BLAST)

001: MAAQVEIEDQ ESVTNLDNGE IINPISDNAP NFSGDATILL REATFEHNLI KNCFLSGMGS FATETTIVTV RKILTQRLIT TKAKFAVFKL FTEAMKRKNN
101: GYANIRYGWY SGSKEEIDRV ITYGFSNREI KKVENDVGSH GVGIHLVHHR YSLAAALVGE GDEEGIKNIL LCRVILGKPE QIVTGSKQSY PSSNQFDSGV
201: DNLENPRKYV IWSCNMNSYI LPTYIVSFKS HLLRGLIGRA RSPCVSFSVL MSILSKSLDA ARMNLILTSY DDFRKRKLRR EQLVRKIREV VGDNLLFKIL
301: KNQRR

Arabidopsis Description

SRO3Probable inactive poly [ADP-ribose] polymerase SRO3 [Source:UniProtKB/Swiss-Prot;Acc:O64592]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.