CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017317.1-P	Field mustard	nucleus	96.04	96.04
CDX84199	Canola	cytosol, nucleus, plastid	62.64	67.34
CDY31694	Canola	nucleus	62.83	63.07
AT2G35510.3	Thale cress	cytosol	59.43	55.46
CDY22597	Canola	nucleus	49.62	48.35
CDY67026	Canola	nucleus	48.49	46.73
CDY60257	Canola	cytosol	28.49	46.18
CDY43007	Canola	nucleus	49.06	44.75
CDY41739	Canola	cytosol	44.91	43.27
KRH74370	Soybean	mitochondrion, nucleus, plastid	39.43	35.85
KRH39574	Soybean	mitochondrion, nucleus, plastid	39.43	35.85
VIT_02s0012g01920.t01	Wine grape	cytosol	36.04	35.83
Solyc08g005270.2.1	Tomato	nucleus	37.36	33.0
PGSC0003DMT400038368	Potato	nucleus	36.23	32.6
VIT_02s0012g01930.t01	Wine grape	nucleus	38.3	32.58
GSMUA_Achr5P14120_001	Banana	nucleus	32.26	30.21
GSMUA_Achr11P...	Banana	nucleus	29.43	30.0
PGSC0003DMT400043197	Potato	nucleus	33.21	29.63
GSMUA_Achr4P19000_001	Banana	nucleus	22.83	28.88
CDY57852	Canola	nucleus	16.23	27.74
GSMUA_Achr8P14660_001	Banana	cytosol, endoplasmic reticulum, nucleus	28.49	27.45
CDY11593	Canola	nucleus	15.47	26.89
GSMUA_Achr2P18060_001	Banana	nucleus	29.06	26.78
Os10t0577800-01	Rice	nucleus	29.62	26.57
TraesCS4A01G321300.1	Wheat	nucleus	28.3	26.36
Os03t0854800-03	Rice	nucleus	28.68	26.03
TraesCS5B01G557500.2	Wheat	nucleus	28.3	25.95
TraesCS5D01G551800.3	Wheat	nucleus	28.3	25.95
KRH74373	Soybean	mitochondrion	23.21	25.79
HORVU5Hr1G124010.1	Barley	nucleus	28.11	25.73
KXG38822	Sorghum	nucleus	28.87	25.71
TraesCS1B01G210300.4	Wheat	peroxisome	28.49	25.64
TraesCS1D01G199200.1	Wheat	cytosol, nucleus, plastid	28.49	25.51
CDY54287	Canola	nucleus	14.72	25.41
TraesCS1A01G195400.4	Wheat	cytosol	28.3	25.34
CDY25790	Canola	cytoskeleton, cytosol, nucleus	14.72	25.08
Zm00001d030110_P001	Maize	mitochondrion, nucleus	28.11	25.0
CDY51640	Canola	cytoskeleton, cytosol, nucleus	14.34	25.0
Zm00001d014423_P002	Maize	nucleus	28.68	24.8
EER90487	Sorghum	nucleus	26.79	24.78
CDY70596	Canola	cytosol	14.15	24.75
CDY00302	Canola	nucleus	14.53	24.6
HORVU1Hr1G050960.7	Barley	nucleus	28.11	24.47
CDY61348	Canola	nucleus	14.34	24.44
CDY30723	Canola	extracellular, golgi	15.85	23.6
CDY66230	Canola	extracellular, golgi	15.28	22.75
CDY44157	Canola	cytoskeleton, cytosol, nucleus	13.21	22.73
HORVU0Hr1G014460.1	Barley	nucleus	23.96	22.01
Zm00001d012821_P003	Maize	extracellular, vacuole	25.85	20.88

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	GO:A0A078H3Z8	UniProt:A0A078H3Z8	EnsemblPlants:CDY32124	ProteinID:CDY32124
ProteinID:CDY32124.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00051489001
InterPro:IPR004170	InterPro:IPR012317	PFAM:PF12174	PFscan:PS50918	PFscan:PS51059	PANTHER:PTHR32263
PANTHER:PTHR32263:SF4	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	SUPFAM:SSF56399	UniParc:UPI0004EDEF33	InterPro:WWE-dom

Description

BnaC04g44420DBnaC04g44420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3Z8]

Coordinates

chrLK032287:+:446429..449865

Molecular Weight (calculated)

58727.2 Da

IEP (calculated)

7.401

GRAVY (calculated)

-0.392

Length

530 amino acids

Sequence
(BLAST)

001: MESNIVKVSD SSFKDGLGKK RKHPSYYTSY DSGRSTAKLQ CVLSPNGSTG KLDKSRNEVN VSENHSGKAL VRYYSYFKKT GVPKRVMLYE NGEWIDLPES
101: IICPIRNDLE AKRAAIEVNC SGRHFVLDFL HMHRLDLETG VKTHLAWIDI AGKCFFPDSV GGEDLEQHGQ CEIKLHLEID INGGKSPKLK LNSTDSCSLE
201: LDDDDVQRWD DETEASMFSG VKPAEEEDLD VDAVREKFVL GMAALGQVEL LDAYRFSGDV AKDRQSLFKK QADITKLSRG DANIRYAWLP AKKELLSAVM
301: MHGLGVCGEL IKKSKYGVGV HLAAANCPYF SATHCDVDEN GVRHMVLCRV IMGNMEPLGG DRAQFVTGGE GYDNGVDNIS SPKHYVVWNM NMNTHVYPEF
401: VVSFKLLSIP NAEGNLLSAA QSKHESSGLT LDGAKGSLSN SAGSRTRRPS SNLMPYPLLF KAISSKVAQK DMDLITAYYQ QLREKKISRE GFSKKLRMIV
501: GDDHLLKTTI TALQRLPHTA VKMEPITGGC

Best Arabidopsis Sequence Match ( AT2G35510.3 )
(BLAST)

001: MEAKIVKVSD SSYKDGLGKK RKHPGNYTPY DSGRSYAKLQ WVLSPNSSTQ KLEKRRNLDG ENKVIVSENH VEKSLVRYFS YYKKTGVPKR VMFHENGEWI
101: DLPDHILCDI RNDLEAKRAT IEFNWCGRHF LLDFLHMYRL DLETGVKTQL AWIDIAGKCF FPETFDTLER DGCHHIRGED PEQHDQREIK LHIEIDVNSG
201: ELPRLNLNVV TDESGDNMDD FQAVQRSSNG PNDEASEDSC SRELDDAVEK WDKTETDRFS GVKPAEEELD KDAVKQMFAL GAATLGHVES LDVYQFSSEI
301: AKARLSLFQK QADITKKHRG DANIRYAWVP AKKEVLSAVM MHGLGVGGAF IKKSMYGVGV HAANCPYFSA RYCDIDDNGV RHMVLCRVIM GNMEPLRGDN
401: TQYFTGGEEY DNGVDDVESP KHYLIWNMNM NTHIYPEFVV SFKLSIPNAE GNILPTTQSR HESSGLTLEG PKGSPSNEPG RVSNGGSGSE KNSSSSRRPR
501: SPIMPFPLLF KAISSKIARK DMDLIIAGYQ ELREKKVSRK EFYKTLSMIV GDDDLLISTI TGLQRSLG

Arabidopsis Description

SRO1Probable inactive poly [ADP-ribose] polymerase SRO1 [Source:UniProtKB/Swiss-Prot;Acc:O82289]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.