CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25790	Canola	cytoskeleton, cytosol, nucleus	84.69	83.6
CDY51640	Canola	cytoskeleton, cytosol, nucleus	62.87	63.49
AT1G23550.1	Thale cress	nucleus	64.5	61.3
CDY44157	Canola	cytoskeleton, cytosol, nucleus	59.61	59.42
CDY57852	Canola	nucleus	53.75	53.23
CDY11593	Canola	nucleus	51.79	52.13
GSMUA_Achr5P03800_001	Banana	cytosol	20.52	37.06
Solyc05g005280.2.1	Tomato	cytosol	36.16	36.51
VIT_01s0127g00680.t01	Wine grape	nucleus	38.44	36.31
PGSC0003DMT400035039	Potato	cytosol	35.18	36.0
KRH42972	Soybean	cytosol	32.9	35.56
Solyc05g005290.2.1	Tomato	cytosol	26.38	34.76
PGSC0003DMT400035056	Potato	cytosol	34.85	32.23
CDY70596	Canola	cytosol	31.27	31.68
CDY00302	Canola	nucleus	32.25	31.63
CDY61348	Canola	nucleus	31.6	31.19
GSMUA_Achr4P27510_001	Banana	cytosol	28.01	29.86
CDY30723	Canola	extracellular, golgi	32.25	27.81
CDY66230	Canola	extracellular, golgi	32.25	27.81
CDY60257	Canola	cytosol	23.78	22.32
CDY67026	Canola	nucleus	29.64	16.55
CDY22597	Canola	nucleus	28.99	16.36
CDX84199	Canola	cytosol, nucleus, plastid	25.41	15.82
CDY31694	Canola	nucleus	26.06	15.15
CDY43007	Canola	nucleus	28.01	14.8
CDY32124	Canola	nucleus	25.41	14.72
CDY41739	Canola	cytosol	24.43	13.64

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	GO:A0A078IWB0	UniProt:A0A078IWB0	EnsemblPlants:CDY54287	ProteinID:CDY54287
ProteinID:CDY54287.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00013767001
InterPro:IPR012317	PFAM:PF12174	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF8	InterPro:Poly(ADP-ribose)pol_cat_dom
InterPro:RST	SUPFAM:SSF56399	UniParc:UPI0004EEEF04	SEG:seg	:	:

Description

BnaC07g48280DBnaC07g48280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWB0]

Coordinates

chrLK033299:-:28451..30260

Molecular Weight (calculated)

34252.8 Da

IEP (calculated)

7.568

GRAVY (calculated)

-0.344

Length

307 amino acids

Sequence
(BLAST)

001: MAAQVEIELD NGEILDPLSD DASSSSSTDS TILLREGDQE HDVITKCFLF GFGATLANAT TIVTIRKKSP NAITTRAKSL AFRIFTEAMA RKNGGDPNVK
101: YGWYAGSRED LERIITYGFS SREIDDDSSN GIGIHLVPSK FSLFAAEATE EDEEGVRHLL LCRLILGKPE EIISGSKQTY PSSIEFDSGV DDVQNPRKYV
201: IWSSTMNSYI LPTYIVTFKS PRLTVISNGG SPARPSSPRV SFDALMSSLS KSMDTLRMNL IIRTFDDFRK RKIQRDQLVR KMREVAGDNL LAQIIKNHRD
301: KNKVRVV

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.