CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57852	Canola	nucleus	87.21	85.81
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	59.02	59.02
CDY51640	Canola	cytoskeleton, cytosol, nucleus	53.11	53.29
CDY54287	Canola	nucleus	52.13	51.79
CDY44157	Canola	cytoskeleton, cytosol, nucleus	52.13	51.62
CDY25790	Canola	cytoskeleton, cytosol, nucleus	51.15	50.16
KRH42972	Soybean	cytosol	32.13	34.51
PGSC0003DMT400035039	Potato	cytosol	33.44	34.0
Solyc05g005290.2.1	Tomato	cytosol	25.9	33.91
GSMUA_Achr5P03800_001	Banana	cytosol	18.69	33.53
VIT_01s0127g00680.t01	Wine grape	nucleus	35.08	32.92
CDY00302	Canola	nucleus	33.11	32.27
CDY61348	Canola	nucleus	32.46	31.83
Solyc05g005280.2.1	Tomato	cytosol	31.48	31.58
CDY70596	Canola	cytosol	30.16	30.36
GSMUA_Achr4P27510_001	Banana	cytosol	27.87	29.51
PGSC0003DMT400035056	Potato	cytosol	31.8	29.22
CDY30723	Canola	extracellular, golgi	31.15	26.69
CDY66230	Canola	extracellular, golgi	30.49	26.12
CDY60257	Canola	cytosol	25.25	23.55
CDX84199	Canola	cytosol, nucleus, plastid	27.21	16.84
CDY67026	Canola	nucleus	28.85	16.0
CDY22597	Canola	nucleus	28.52	15.99
CDY31694	Canola	nucleus	27.54	15.91
CDY32124	Canola	nucleus	26.89	15.47
CDY43007	Canola	nucleus	27.54	14.46
CDY41739	Canola	cytosol	24.59	13.64

Protein Annotations

Gene3D:3.90.228.10	MapMan:35.1	GO:A0A078FHQ5	UniProt:A0A078FHQ5	EnsemblPlants:CDY11593	ProteinID:CDY11593
ProteinID:CDY11593.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00049707001
InterPro:IPR012317	PFAM:PF12174	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF8	InterPro:Poly(ADP-ribose)pol_cat_dom
InterPro:RST	SUPFAM:SSF56399	UniParc:UPI0004EEFC6C	SEG:seg	:	:

Description

BnaC06g31460DBnaC06g31460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHQ5]

Coordinates

chrLK032012:+:316942..318392

Molecular Weight (calculated)

33900.6 Da

IEP (calculated)

8.563

GRAVY (calculated)

-0.330

Length

305 amino acids

Sequence
(BLAST)

001: MMMAAQVEIV DNGEIIDSLS PHTSGDYSST ILLREENHEY DVVKNCFLSG MGHHAAETTV VSVRKTSAQR ITAKAKLAAS NVFAEAMKRK NGGDANVRYG
101: WYSGSKEEIE RIVSYGFSSS EVEKDEKDDR SHGVGVHFLH HTCSLAAAVL GEADEEGIQR LLLCRLILGK PERIISGSKQ SYPSSSGYDC GVDNLENPRK
201: YVIWSCNMNS YIFPSHVVSF KSPTLRGLIR GGGGLGRARS PCVSFPILMS ILSKSLDRPR MNVILTTYVD FRKGKVRREQ LIRKMREVVG DELLLDIIKN
301: HRNSD

Best Arabidopsis Sequence Match ( AT1G70440.1 )
(BLAST)

001: MAAQVEIEDQ ESVTNLDNGE IINPISDNAP NFSGDATILL REATFEHNLI KNCFLSGMGS FATETTIVTV RKILTQRLIT TKAKFAVFKL FTEAMKRKNN
101: GYANIRYGWY SGSKEEIDRV ITYGFSNREI KKVENDVGSH GVGIHLVHHR YSLAAALVGE GDEEGIKNIL LCRVILGKPE QIVTGSKQSY PSSNQFDSGV
201: DNLENPRKYV IWSCNMNSYI LPTYIVSFKS HLLRGLIGRA RSPCVSFSVL MSILSKSLDA ARMNLILTSY DDFRKRKLRR EQLVRKIREV VGDNLLFKIL
301: KNQRR

Arabidopsis Description

SRO3Probable inactive poly [ADP-ribose] polymerase SRO3 [Source:UniProtKB/Swiss-Prot;Acc:O64592]
SUBAcon: [cytosol,nucleus,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.