Factsheet for PGSC0003DMT400035039

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005290.2.1	Tomato	cytosol	54.67	70.39
PGSC0003DMT400035056	Potato	cytosol	63.0	56.93
VIT_01s0127g00680.t01	Wine grape	nucleus	46.33	42.77
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	37.0	36.04
CDY44157	Canola	cytoskeleton, cytosol, nucleus	37.0	36.04
AT1G23550.1	Thale cress	nucleus	38.67	35.91
CDY54287	Canola	nucleus	36.0	35.18
KRH42972	Soybean	cytosol	33.0	34.86
CDY51640	Canola	cytoskeleton, cytosol, nucleus	35.0	34.54
CDY25790	Canola	cytoskeleton, cytosol, nucleus	35.67	34.41
Bra016219.1-P	Field mustard	nucleus	34.67	34.21
Bra012380.1-P	Field mustard	cytosol	35.33	34.19
CDY57852	Canola	nucleus	34.67	33.55
CDY11593	Canola	nucleus	34.0	33.44
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	33.67	33.11
GSMUA_Achr5P03800_001	Banana	cytosol	18.33	32.35
GSMUA_Achr4P27510_001	Banana	cytosol	30.33	31.6
PGSC0003DMT400063250	Potato	nucleus	39.0	31.12
PGSC0003DMT400012725	Potato	cytosol	25.67	18.47
PGSC0003DMT400093081	Potato	nucleus	11.33	17.99
PGSC0003DMT400038368	Potato	nucleus	28.67	14.6
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	24.33	14.31
PGSC0003DMT400043197	Potato	nucleus	27.67	13.97

Protein Annotations

EnsemblPlants:PGSC0003DMT400035039	EnsemblPlantsGene:PGSC0003DMG400013476	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	GO:GO:0016757	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF8	PFAM:PF00644	PFAM:PF12174	PFscan:PS51059	PGSC:PGSC0003DMG400013476	SUPFAM:SSF56399
UniParc:UPI0002964090	UniProt:M1B1Q5	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013476]

Coordinates

chr5:+:8680075..8682306

Molecular Weight (calculated)

33721.9 Da

IEP (calculated)

9.324

GRAVY (calculated)

-0.218

Length

300 amino acids

Sequence
(BLAST)

001: MLLSFDSEAE SPSPALHNSF RSFKRNGMIE LEERNKEHDL IKAGFLSGMG HLGKEVEIVA IHKNSCSTIL GQARLESFRI YSEAMRKKCG GNANIKYAWF
101: GSSKDEICNI ISHGFSTITE PKSGECFGIG VHLYPANIHG VLSAVEDEDG LRHMLLCRVI LGNTEVIEAS SKQFQPTCQD FDSGVDNYLA PKTYIIWPSN
201: MNSHILPNFV VSYRCPSCLL GASSKIKKVS PKSNSRIKFH DLLRVLSKYL HPSRMVLISK YYEDFQKNKI TKLVLIRKLR QIAGDTSLRA VMKLYPNTTI

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.