CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012380.1-P	Field mustard	cytosol	94.53	94.84
CDY54287	Canola	nucleus	83.6	84.69
CDY51640	Canola	cytoskeleton, cytosol, nucleus	61.09	62.5
AT1G23550.1	Thale cress	nucleus	63.02	60.68
CDY44157	Canola	cytoskeleton, cytosol, nucleus	55.95	56.49
CDY57852	Canola	nucleus	54.34	54.52
CDY11593	Canola	nucleus	50.16	51.15
Solyc05g005280.2.1	Tomato	cytosol	35.37	36.18
GSMUA_Achr5P03800_001	Banana	cytosol	19.61	35.88
PGSC0003DMT400035039	Potato	cytosol	34.41	35.67
VIT_01s0127g00680.t01	Wine grape	nucleus	36.66	35.08
KRH42972	Soybean	cytosol	31.83	34.86
Solyc05g005290.2.1	Tomato	cytosol	25.72	34.33
CDY00302	Canola	nucleus	33.12	32.91
CDY61348	Canola	nucleus	32.48	32.48
CDY70596	Canola	cytosol	31.51	32.34
PGSC0003DMT400035056	Potato	cytosol	34.08	31.93
GSMUA_Achr4P27510_001	Banana	cytosol	27.33	29.51
CDY66230	Canola	extracellular, golgi	32.8	28.65
CDY30723	Canola	extracellular, golgi	32.8	28.65
CDY60257	Canola	cytosol	24.44	23.24
CDX84199	Canola	cytosol, nucleus, plastid	25.72	16.23
CDY67026	Canola	nucleus	27.97	15.82
CDY22597	Canola	nucleus	27.65	15.81
CDY31694	Canola	nucleus	25.08	14.77
CDY32124	Canola	nucleus	25.08	14.72
CDY43007	Canola	nucleus	27.01	14.46
CDY41739	Canola	cytosol	22.83	12.91

Protein Annotations

EnsemblPlants:CDY25790	EnsemblPlantsGene:GSBRNA2T00033195001	Gene3D:3.90.228.10	GO:A0A078GH55	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF8	PFAM:PF12174	PFscan:PS51059	ProteinID:CDY25790	ProteinID:CDY25790.1	SEG:seg
SUPFAM:SSF56399	UniParc:UPI0004EEA0FD	UniProt:A0A078GH55	MapMan:35.1	:	:

Description

BnaA07g09920DBnaA07g09920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GH55]

Coordinates

chrLK032180:+:328000..329721

Molecular Weight (calculated)

34717.4 Da

IEP (calculated)

8.743

GRAVY (calculated)

-0.323

Length

311 amino acids

Sequence
(BLAST)

001: MAAQVEIELD NGEILDPLSS SSSATDSTIL LREGDQEHDV ITTCFLSGLG ATLANATTIV TIRKKSPNAI TTRAKSLAFR IFTEAMARKN NGDPNVKYGW
101: YAASREDLER IVTYGFSSRE IDDDSSSNGI GIGIHLVPSK FSLFAAEATE EDEEGLRHLL LCRLILGKPE EIVSGSKQAY PSSVEFDSGV DDVQNPRKYV
201: VWSSTMNSYI LPTYIVAFKS PRLTVIRNGG SPARLSSPRV SFAALMLSLS KSMDTFRMNL IIRTYDDFRK RKIQRDQLVR KMREVAGDNL LAQIIRNHRD
301: KNKRKFYTCD A

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.