Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22597 | Canola | nucleus | 72.46 | 77.39 |
| CDY67026 | Canola | nucleus | 72.98 | 77.09 |
| AT1G32230.1 | Thale cress | nucleus | 72.98 | 71.99 |
| CDY60257 | Canola | cytosol | 39.41 | 70.03 |
| CDY41739 | Canola | cytosol | 63.34 | 66.91 |
| CDY31694 | Canola | nucleus | 44.92 | 49.43 |
| CDY32124 | Canola | nucleus | 44.75 | 49.06 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 40.96 | 48.28 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 34.77 | 37.9 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 35.97 | 35.85 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 35.8 | 35.68 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 37.35 | 34.83 |
| Solyc08g005270.2.1 | Tomato | nucleus | 35.11 | 34.0 |
| PGSC0003DMT400038368 | Potato | nucleus | 33.05 | 32.6 |
| GSMUA_Achr11P... | Banana | nucleus | 28.06 | 31.35 |
| PGSC0003DMT400043197 | Potato | nucleus | 31.84 | 31.14 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 29.43 | 30.21 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 21.17 | 29.36 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 27.19 | 28.73 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 28.06 | 28.35 |
| CDY54287 | Canola | nucleus | 14.8 | 28.01 |
| CDY51640 | Canola | cytoskeleton, cytosol, nucleus | 14.63 | 27.96 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 27.19 | 27.77 |
| CDY57852 | Canola | nucleus | 14.8 | 27.74 |
| Os10t0577800-01 | Rice | nucleus | 28.06 | 27.58 |
| CDY11593 | Canola | nucleus | 14.46 | 27.54 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 27.37 | 27.51 |
| CDY44157 | Canola | cytoskeleton, cytosol, nucleus | 14.46 | 27.27 |
| KXG38822 | Sorghum | nucleus | 27.88 | 27.23 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 27.71 | 27.2 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 27.02 | 27.12 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 27.54 | 27.03 |
| CDY25790 | Canola | cytoskeleton, cytosol, nucleus | 14.46 | 27.01 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 26.85 | 26.99 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 27.19 | 26.83 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 27.71 | 26.44 |
| KRH74373 | Soybean | mitochondrion | 21.69 | 26.42 |
| EER90487 | Sorghum | nucleus | 25.82 | 26.18 |
| Os03t0854800-03 | Rice | nucleus | 25.82 | 25.68 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 26.33 | 25.67 |
| Zm00001d014423_P002 | Maize | nucleus | 26.85 | 25.45 |
| CDY70596 | Canola | cytosol | 12.74 | 24.42 |
| CDY61348 | Canola | nucleus | 12.74 | 23.79 |
| CDY00302 | Canola | nucleus | 12.74 | 23.64 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 23.06 | 23.22 |
| CDY30723 | Canola | extracellular, golgi | 14.11 | 23.03 |
| CDY66230 | Canola | extracellular, golgi | 14.11 | 23.03 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 25.82 | 22.87 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | GO:A0A078HYP0 | UniProt:A0A078HYP0 | EnsemblPlants:CDY43007 | ProteinID:CDY43007 |
| ProteinID:CDY43007.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 | GO:GO:0016740 | GO:GO:0016757 |
| EnsemblPlantsGene:GSBRNA2T00075819001 | InterPro:IPR004170 | InterPro:IPR012317 | PFAM:PF00644 | PFAM:PF12174 | PFscan:PS50918 |
| PFscan:PS51059 | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | SUPFAM:SSF56399 |
| UniParc:UPI0004EDEC8D | InterPro:WWE-dom | SEG:seg | : | : | : |
Description
BnaC05g28860DPoly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:A0A078HYP0]
Coordinates
chrLK032542:-:174698..178406
Molecular Weight (calculated)
64166.6 Da
IEP (calculated)
6.901
GRAVY (calculated)
-0.424
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVKIVKGLD SRCENGFGKK RKRPPSYAAY VNGVSCAKLQ DVPPPNPQSQ LPDKRRKLEG ENKICSSENR SGKSLVRYYT YFKKSGIAKR VMIYEKGEWN
101: DVPAHIICAI QKDLDEKRAA IEFEWCGHRF LLDFLHMYKL DLETGSKTPL AWIDIGGKCF FPEIYESDER NYCCRRNCTE DLKRSSSHEI NLRLEIDVNG
201: GESPRLNLEE CSDEAGDGMD DVPAEDSCSR KIGAAVSKWD ETDAVAVSGP KPAGAEGLDK DAVQKMFAIG TASLGPVAVL DVGRFSSEIA EARLALFEKQ
301: VEITKKRRGD ANVRYAWLPA KREVLSAVMM QGLGVGGTFI RKSMYGVGIH LTAADCPYFS ARYCDIDENG VRYMVLCRVI MGNMEPLRGD KAQFFSGGEE
401: YDNGVDDVEK PKNYVVWNIN MNTHVFPEFV VRFKLSVPTN AEGNLVARND NSGVTLEGPK DVSPQLVSHG PEGGSGSGSA NSVGSSTTKP NSPRMPFPVV
501: FAAISHKISE KDMSLINADY QQLRGKKMTR AEFVRKLRGI VGDDLLRSTI TALENQASLL LTNDIPGSMR EVEQGAGGMM I
101: DVPAHIICAI QKDLDEKRAA IEFEWCGHRF LLDFLHMYKL DLETGSKTPL AWIDIGGKCF FPEIYESDER NYCCRRNCTE DLKRSSSHEI NLRLEIDVNG
201: GESPRLNLEE CSDEAGDGMD DVPAEDSCSR KIGAAVSKWD ETDAVAVSGP KPAGAEGLDK DAVQKMFAIG TASLGPVAVL DVGRFSSEIA EARLALFEKQ
301: VEITKKRRGD ANVRYAWLPA KREVLSAVMM QGLGVGGTFI RKSMYGVGIH LTAADCPYFS ARYCDIDENG VRYMVLCRVI MGNMEPLRGD KAQFFSGGEE
401: YDNGVDDVEK PKNYVVWNIN MNTHVFPEFV VRFKLSVPTN AEGNLVARND NSGVTLEGPK DVSPQLVSHG PEGGSGSGSA NSVGSSTTKP NSPRMPFPVV
501: FAAISHKISE KDMSLINADY QQLRGKKMTR AEFVRKLRGI VGDDLLRSTI TALENQASLL LTNDIPGSMR EVEQGAGGMM I
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.