Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03760.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11268 | Canola | plasma membrane | 85.33 | 84.21 |
| CDY10358 | Canola | plasma membrane | 83.43 | 82.33 |
| CDX70286 | Canola | plasma membrane | 83.24 | 82.14 |
| AT5G03760.1 | Thale cress | plasma membrane | 81.71 | 80.49 |
| Solyc10g083670.1.1 | Tomato | plasma membrane | 70.29 | 69.23 |
| KRH67832 | Soybean | plasma membrane | 70.1 | 69.04 |
| KRG96119 | Soybean | plasma membrane | 69.9 | 68.86 |
| PGSC0003DMT400072644 | Potato | plasma membrane | 69.71 | 68.67 |
| GSMUA_Achr10P... | Banana | plasma membrane | 68.0 | 67.87 |
| VIT_08s0007g03990.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 69.14 | 67.22 |
| GSMUA_Achr2P20260_001 | Banana | plasma membrane | 68.0 | 66.98 |
| PGSC0003DMT400007050 | Potato | mitochondrion | 67.62 | 66.6 |
| GSMUA_Achr10P... | Banana | plasma membrane | 67.62 | 66.6 |
| KRH32645 | Soybean | plasma membrane | 64.76 | 66.54 |
| GSMUA_Achr6P13400_001 | Banana | plasma membrane | 68.57 | 66.42 |
| KRH20021 | Soybean | plasma membrane | 64.57 | 66.34 |
| Solyc09g009010.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 36.57 | 64.21 |
| CDX88785 | Canola | plasma membrane | 57.71 | 59.41 |
| CDY35710 | Canola | plasma membrane | 57.52 | 59.1 |
| CDX71011 | Canola | plasma membrane | 57.33 | 59.02 |
| CDY26949 | Canola | plasma membrane | 57.14 | 58.82 |
| CDY09164 | Canola | plasma membrane | 57.14 | 58.82 |
| CDY47368 | Canola | endoplasmic reticulum, extracellular | 6.48 | 58.62 |
| CDX69464 | Canola | cytosol, peroxisome, plasma membrane | 48.38 | 57.34 |
| CDX70677 | Canola | cytosol, peroxisome, plasma membrane | 48.19 | 57.11 |
| CDX78675 | Canola | plasma membrane | 54.29 | 56.55 |
| CDY26505 | Canola | plasma membrane | 54.48 | 55.75 |
| GSMUA_Achr5P15920_001 | Banana | plasma membrane | 62.86 | 55.0 |
| CDY44151 | Canola | plasma membrane | 56.19 | 53.15 |
| CDY04707 | Canola | plasma membrane | 56.19 | 53.15 |
| CDY32098 | Canola | plasma membrane | 54.29 | 52.49 |
| CDX79614 | Canola | plasma membrane | 54.86 | 52.27 |
| CDY40295 | Canola | plasma membrane | 53.52 | 51.47 |
| CDX72181 | Canola | plasma membrane | 51.24 | 51.43 |
| CDY54604 | Canola | plasma membrane | 51.24 | 51.34 |
| CDY01129 | Canola | plasma membrane | 52.57 | 51.3 |
| CDY68733 | Canola | plasma membrane | 26.29 | 50.74 |
| CDY32110 | Canola | mitochondrion | 42.48 | 50.68 |
| CDY47369 | Canola | plasma membrane | 28.38 | 49.67 |
| CDY09672 | Canola | golgi | 33.14 | 49.43 |
| CDX84607 | Canola | mitochondrion | 11.24 | 49.17 |
| CDY40448 | Canola | plasma membrane | 54.67 | 48.48 |
| CDX90506 | Canola | plasma membrane | 49.52 | 47.02 |
| CDY04011 | Canola | cytosol, peroxisome, plasma membrane | 32.38 | 37.2 |
| CDY00138 | Canola | cytosol, peroxisome, plasma membrane | 31.81 | 36.54 |
| CDY32100 | Canola | cytosol | 1.14 | 35.29 |
| CDY34018 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 35.81 | 33.16 |
| CDX92340 | Canola | plasma membrane | 56.95 | 31.64 |
| CDX76802 | Canola | plasma membrane | 36.57 | 29.09 |
| CDY34762 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 36.57 | 28.07 |
| CDY20029 | Canola | plasma membrane | 35.05 | 27.96 |
| CDY13445 | Canola | plasma membrane | 36.57 | 27.95 |
| CDX72314 | Canola | plasma membrane | 36.38 | 27.92 |
| CDX86448 | Canola | plasma membrane | 34.67 | 27.7 |
| CDX85189 | Canola | plasma membrane | 34.67 | 27.7 |
| CDX83148 | Canola | plasma membrane | 35.62 | 27.02 |
| CDY08003 | Canola | cytosol, peroxisome, plasma membrane | 34.67 | 26.19 |
| CDX74051 | Canola | cytosol, peroxisome, plasma membrane | 34.48 | 25.89 |
| CDX68766 | Canola | plasma membrane | 36.95 | 25.03 |
| CDY60854 | Canola | plasma membrane | 36.95 | 22.17 |
| CDX75177 | Canola | cytosol | 10.29 | 18.56 |
| CDY47235 | Canola | plasma membrane | 11.43 | 18.4 |
| CDY57881 | Canola | extracellular | 4.0 | 16.8 |
Protein Annotations
| EnsemblPlants:CDX80885 | EnsemblPlantsGene:GSBRNA2T00134285001 | Gene3D:3.90.550.10 | GO:A0A078CVK0 | InterPro:Glyco_trans_2-like | InterPro:IPR029044 |
| InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR32044 | PANTHER:PTHR32044:SF10 | PFAM:PF00535 | ProteinID:CDX80885 | ProteinID:CDX80885.1 |
| SEG:seg | SUPFAM:SSF53448 | TMHMM:TMhelix | UniParc:UPI0004EED900 | MapMan:50.2.4 | : |
Description
BnaC03g01390D
Coordinates
chrLK031823:-:638018..644847
Molecular Weight (calculated)
60160.1 Da
IEP (calculated)
9.823
GRAVY (calculated)
0.153
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGDSSAVI PDSFMGYRDD ITMQMSMILD QIRAPLIVPV LRLAVYICLT MSVMLFVERV YMGIVISLVK LFGRKPEKRF KWEPMKDDIE HGNSVYPMVL
101: VQIPMYNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP AIKDLVEKEC SRWASKGINI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EPDYLWRTVP FLLHNPKLAL VQARWKFGNF LKISGYYLKM FFYFEIHSFD FSLLGLGIRG PNRVSVLSNR VSVFRVYQNQ PHSDYLKVRF GTGSGSIGFG
301: SGLVKNELPS TFKAYRYQQH RWSCGPANLF RKMAFEIMTN KNVTLWKKVH VIYSFFVVRK IVAHIVTFIF YCVILPATVF VPEVTVPKWG AVYIPSIITL
401: LNAVGTPRSL HLMVFWILFE NVMSLHRTKA TFIGLLEGGR VNEWIVTEKL GDLKAKSATK TSKKLRFRFG DRIHVLELGV GMYLFFVGCY DVFFGKNHYY
501: LYLFAQAIAF FIAGLGQIGT IVPNS
101: VQIPMYNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP AIKDLVEKEC SRWASKGINI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EPDYLWRTVP FLLHNPKLAL VQARWKFGNF LKISGYYLKM FFYFEIHSFD FSLLGLGIRG PNRVSVLSNR VSVFRVYQNQ PHSDYLKVRF GTGSGSIGFG
301: SGLVKNELPS TFKAYRYQQH RWSCGPANLF RKMAFEIMTN KNVTLWKKVH VIYSFFVVRK IVAHIVTFIF YCVILPATVF VPEVTVPKWG AVYIPSIITL
401: LNAVGTPRSL HLMVFWILFE NVMSLHRTKA TFIGLLEGGR VNEWIVTEKL GDLKAKSATK TSKKLRFRFG DRIHVLELGV GMYLFFVGCY DVFFGKNHYY
501: LYLFAQAIAF FIAGLGQIGT IVPNS
001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH
Arabidopsis Description
CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.