Factsheet for GSMUA_Achr6P13400_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03760.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plasma membrane	88.01	90.68
GSMUA_Achr2P20260_001	Banana	plasma membrane	85.98	87.43
GSMUA_Achr10P...	Banana	plasma membrane	83.39	84.8
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	46.68	84.62
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	81.55	81.85
Solyc10g083670.1.1	Tomato	plasma membrane	79.89	81.24
KRH67832	Soybean	plasma membrane	79.52	80.86
PGSC0003DMT400072644	Potato	plasma membrane	79.34	80.68
KRG96119	Soybean	plasma membrane	79.15	80.49
PGSC0003DMT400007050	Potato	mitochondrion	78.97	80.3
CDX70286	Canola	plasma membrane	78.78	80.26
CDY10358	Canola	plasma membrane	78.78	80.26
Bra009512.1-P	Field mustard	plasma membrane	78.6	80.08
CDY11268	Canola	plasma membrane	78.41	79.89
Bra005779.1-P	Field mustard	plasma membrane	78.23	79.7
GSMUA_Achr6P07540_001	Banana	plasma membrane	76.75	78.79
AT5G03760.1	Thale cress	plasma membrane	77.31	78.61
KRH20021	Soybean	plasma membrane	72.69	77.1
KRH32645	Soybean	plasma membrane	72.32	76.71
GSMUA_Achr5P15920_001	Banana	plasma membrane	79.15	71.5
GSMUA_Achr9P26970_001	Banana	endoplasmic reticulum, extracellular	24.35	69.47
CDX80885	Canola	plasma membrane	66.42	68.57
GSMUA_Achr9P26980_001	Banana	plasma membrane	36.72	66.56
GSMUA_AchrUn_...	Banana	plasma membrane	62.36	64.26
GSMUA_Achr11P...	Banana	plasma membrane	51.48	63.84
GSMUA_Achr6P02600_001	Banana	extracellular, plasma membrane	56.64	63.04
GSMUA_Achr7P18150_001	Banana	plasma membrane	59.41	59.41
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	58.12	58.88
GSMUA_Achr7P21070_001	Banana	plasma membrane	57.01	58.08
GSMUA_Achr7P19790_001	Banana	mitochondrion	11.81	46.72
GSMUA_Achr3P01830_001	Banana	cytosol, peroxisome, plasma membrane	57.38	46.07
GSMUA_Achr4P02100_001	Banana	plasma membrane	40.96	37.44
GSMUA_Achr4P05880_001	Banana	plasma membrane	41.14	37.17
GSMUA_Achr7P19500_001	Banana	cytosol, peroxisome, plasma membrane	40.77	35.82
GSMUA_Achr7P00750_001	Banana	plasma membrane	41.14	35.74
GSMUA_Achr6P30200_001	Banana	cytosol	40.41	35.49
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	40.59	35.37
GSMUA_Achr3P28000_001	Banana	plasma membrane	41.14	35.01
GSMUA_Achr4P32270_001	Banana	plasma membrane	41.14	34.95
GSMUA_Achr5P01920_001	Banana	plasma membrane	40.96	34.47
GSMUA_Achr6P01880_001	Banana	golgi, peroxisome, plasma membrane	39.85	34.29
GSMUA_Achr6P27800_001	Banana	plasma membrane	39.85	33.44
GSMUA_Achr4P23120_001	Banana	cytosol, peroxisome, plasma membrane	42.25	32.53

Protein Annotations

EnsemblPlants:GSMUA_Achr6P13400_001	EnsemblPlants:GSMUA_Achr6T13400_001	EnsemblPlantsGene:GSMUA_Achr6G13400_001	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF10	PFAM:PF13641
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0002951543	UniProt:M0T6N8	MapMan:21.2.3.1.1.1

Description

Glucomannan 4-beta-mannosyltransferase 9 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13400_001]

Coordinates

chr6:+:8922216..8925070

Molecular Weight (calculated)

61672.7 Da

IEP (calculated)

9.034

GRAVY (calculated)

0.173

Length

542 amino acids

Sequence
(BLAST)

001: MDRLTSTALL PESFQGARDD ITEQMGMVWQ QIKAPVMVPL LRLAVFLCLV MSVMLVVEKA YMAVVIVLVK LFGRRPEKRY RWEPMRDDLE LGSSSYPMVL
101: VQIPMYNEKE VYQLSIGAAC GLSWPSDRII IQVLDDSTDP VIKDLVEAEC RRWASKGVNI KYEIRDNRSG YKAGALKEGM KHSYVNHCDY VAIFDADFQP
201: EPDFLYRTVP FLLHNPAVGL VQARWKFGGL TRANFAVNSD ECLMARMQEM SLDYHFTVEQ EVGSSAYAFF GFNGTAGVWR IAALNEAGGW KDRTTVEDMD
301: LAVRASLKGW KFVFLGDLKV KNELPSTLRA YRYQQHRWSC GPANLFRKMA MEIANNKKVS LWKKVHVIYS FFFVRKVVAH IVTFVFYCVV IPAAVLVPEV
401: EIPRWGAIYI PSIIALLNAV GTPRSLHLLV FWILFENVMS LHRTKATLIG LLEAGRVNEW VVTEKLGDTV KAKMAVKAAR KPPIRIGDRL HLLELWTGAY
501: LFFCGCYDVA FGKNHYFLYL FLQAIAFFVV GFGYVGTFVP GY

Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)

001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Arabidopsis Description

CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.