Factsheet for GSMUA_Achr9P26980_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76114	Sorghum	plasma membrane	72.24	44.08
GSMUA_Achr11P...	Banana	plasma membrane	62.21	42.56
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	74.25	41.5
TraesCS7B01G093900.1	Wheat	plasma membrane	71.91	39.31
TraesCS7D01G190000.1	Wheat	plasma membrane	71.57	39.27
Zm00001d037235_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	70.9	39.26
TraesCS7A01G189100.2	Wheat	plasma membrane	71.24	38.66
GSMUA_Achr2P20260_001	Banana	plasma membrane	67.56	37.9
GSMUA_Achr6P02600_001	Banana	extracellular, plasma membrane	61.54	37.78
GSMUA_Achr10P...	Banana	plasma membrane	67.22	37.71
HORVU7Hr1G038440.1	Barley	cytosol, nucleus	71.57	37.61
GSMUA_Achr10P...	Banana	plasma membrane	65.89	37.45
GSMUA_Achr6P07540_001	Banana	plasma membrane	64.88	36.74
GSMUA_Achr6P13400_001	Banana	plasma membrane	66.56	36.72
GSMUA_Achr7P18150_001	Banana	plasma membrane	64.21	35.42
GSMUA_AchrUn_...	Banana	plasma membrane	61.2	34.79
GSMUA_Achr7P21070_001	Banana	plasma membrane	58.19	32.71
GSMUA_Achr5P15920_001	Banana	plasma membrane	63.21	31.5
Os06t0230100-00	Rice	nucleus	61.54	29.77
GSMUA_Achr3P01830_001	Banana	cytosol, peroxisome, plasma membrane	58.53	25.93
GSMUA_Achr4P05880_001	Banana	plasma membrane	43.81	21.83
GSMUA_Achr4P02100_001	Banana	plasma membrane	42.47	21.42
GSMUA_Achr7P19500_001	Banana	cytosol, peroxisome, plasma membrane	44.15	21.39
GSMUA_Achr6P30200_001	Banana	cytosol	43.48	21.07
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	43.81	21.06
GSMUA_Achr7P00750_001	Banana	plasma membrane	43.81	20.99
GSMUA_Achr6P01880_001	Banana	golgi, peroxisome, plasma membrane	43.48	20.63
GSMUA_Achr4P32270_001	Banana	plasma membrane	43.81	20.53
GSMUA_Achr5P01920_001	Banana	plasma membrane	44.15	20.5
GSMUA_Achr3P28000_001	Banana	plasma membrane	42.81	20.09
GSMUA_Achr6P27800_001	Banana	plasma membrane	42.47	19.66
GSMUA_Achr4P23120_001	Banana	cytosol, peroxisome, plasma membrane	44.82	19.03
GSMUA_Achr7P19790_001	Banana	mitochondrion	8.03	17.52
GSMUA_Achr9P26970_001	Banana	endoplasmic reticulum, extracellular	1.0	1.58

Protein Annotations

EnsemblPlants:GSMUA_Achr9P26980_001	EnsemblPlants:GSMUA_Achr9T26980_001	EnsemblPlantsGene:GSMUA_Achr9G26980_001	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Glyco_trans_2-like	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF21
PFAM:PF13632	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000296C274	UniProt:M0U3V5
MapMan:50.2.4	:	:	:	:	:

Description

Probable mannan synthase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G26980_001]

Coordinates

chr9:+:31306397..31308352

Molecular Weight (calculated)

34173.2 Da

IEP (calculated)

9.622

GRAVY (calculated)

0.328

Length

299 amino acids

Sequence
(BLAST)

001: MTRIQKMTLD YHFKVEQEAG SSTFAFFGFN GTAGVWRISA INEVGGWKDR TTVEDMDLAV RASLKGWKLL YVGDLKVKSE LPSTLKAYRH QQHRWTCGAA
101: HLFRKIIVEI SMAKEVSFWK KCYLIYSFFF VRKIVAHTVT FFLYCIVIPT SVLVPEVIIP TWGVVYIPTT ITLLNAIRNP RSIHLMPFWI LFENVMSMHR
201: MKATMIGLFE AGSVNEWVVT EKLGDTLLEK TKIPILEKPS SGLRERIHLP EIGFAVFLFL CASYNLAYGK NSFYVYIYLQ AVAFLVVGLG YVGCFISNT

Best Arabidopsis Sequence Match ( AT1G23480.1 )
(BLAST)

001: MSPFLKFFLF LYDYLSPSSF FLVQRNTLGA SLDTTDGVVR SGIIGEIIYI WKQTRIFVFI PILKCLVTIC LVMSLLLFIE RVYMSIVVVF VKLLRRTPEK
101: VHKWEPINDD DLELANTNYP MVLIQIPMYN EKEVCQLSIG AACRLSWPLD RMIVQVLDDS TDPASKELVN AECDKWARKG INIMSEIRDN RIGYKAGALK
201: AGMMHNYVKQ CEFVAIFDAD FQPDPDFLER TIPFLIHNHE ISLVQCRWKF VNANECLMTR MQEMSLNYHF VAEQESGSSI HAFFGFNGTA GVWRIAALNE
301: AGGWKDRTTV EDMDLAVRAC LHGWKFVYVH DVEVKNELPS TFKAYRFQQH RWSCGPANLW RKMTMEILQN KKVSAWKKLY LIYNFFFIRK IVVHIFTFVF
401: YCLILPTTVL FPELQVPKWA TVYFPTTITI LNAIATPRSL HLLVFWILFE NVMSMHRTKA TFIGLLEAGR VNEWVVTEKL GDTLKSKLIG KATTKLYTRF
501: GQRLNWRELV VGLYIFFCGC YDFAYGGSYF YVYLFLQSCA FFVAGVGYIG TFVPTV

Arabidopsis Description

CSLA3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q7B4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.