Factsheet for GSMUA_Achr5P15920_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03760.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT5G03760.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plasma membrane	74.33	83.68
GSMUA_Achr10P...	Banana	plasma membrane	70.67	80.61
GSMUA_Achr6P13400_001	Banana	plasma membrane	71.5	79.15
GSMUA_Achr6P07540_001	Banana	plasma membrane	67.83	77.08
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.17	76.85
KRG96119	Soybean	plasma membrane	68.17	76.74
KRH67832	Soybean	plasma membrane	68.0	76.55
GSMUA_Achr2P20260_001	Banana	plasma membrane	67.83	76.36
Solyc10g083670.1.1	Tomato	plasma membrane	67.33	75.8
PGSC0003DMT400072644	Potato	plasma membrane	67.33	75.8
PGSC0003DMT400007050	Potato	mitochondrion	67.0	75.42
CDY10358	Canola	plasma membrane	66.5	75.0
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	37.33	74.92
CDX70286	Canola	plasma membrane	66.33	74.81
Bra009512.1-P	Field mustard	plasma membrane	66.33	74.81
CDY11268	Canola	plasma membrane	65.83	74.25
Bra005779.1-P	Field mustard	plasma membrane	65.67	74.06
AT5G03760.1	Thale cress	plasma membrane	65.0	73.17
KRH32645	Soybean	plasma membrane	61.83	72.6
KRH20021	Soybean	plasma membrane	61.83	72.6
GSMUA_Achr9P26970_001	Banana	endoplasmic reticulum, extracellular	21.33	67.37
GSMUA_Achr9P26980_001	Banana	plasma membrane	31.5	63.21
CDX80885	Canola	plasma membrane	55.0	62.86
GSMUA_Achr11P...	Banana	plasma membrane	45.67	62.7
GSMUA_AchrUn_...	Banana	plasma membrane	53.17	60.65
GSMUA_Achr6P02600_001	Banana	extracellular, plasma membrane	49.0	60.37
GSMUA_Achr7P18150_001	Banana	plasma membrane	51.0	56.46
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, vacuole	50.17	56.26
GSMUA_Achr7P21070_001	Banana	plasma membrane	49.83	56.2
GSMUA_Achr3P01830_001	Banana	cytosol, peroxisome, plasma membrane	51.0	45.33
GSMUA_Achr7P19790_001	Banana	mitochondrion	10.33	45.26
GSMUA_Achr4P02100_001	Banana	plasma membrane	36.33	36.76
GSMUA_Achr4P05880_001	Banana	plasma membrane	36.0	36.0
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	37.0	35.69
GSMUA_Achr6P30200_001	Banana	cytosol	36.67	35.66
GSMUA_Achr7P19500_001	Banana	cytosol, peroxisome, plasma membrane	35.83	34.85
GSMUA_Achr4P32270_001	Banana	plasma membrane	37.0	34.8
GSMUA_Achr7P00750_001	Banana	plasma membrane	35.83	34.46
GSMUA_Achr5P01920_001	Banana	plasma membrane	36.83	34.32
GSMUA_Achr6P01880_001	Banana	golgi, peroxisome, plasma membrane	35.5	33.81
GSMUA_Achr3P28000_001	Banana	plasma membrane	35.83	33.75
GSMUA_Achr6P27800_001	Banana	plasma membrane	34.83	32.35
GSMUA_Achr4P23120_001	Banana	cytosol, peroxisome, plasma membrane	37.83	32.24

Protein Annotations

EnsemblPlants:GSMUA_Achr5P15920_001	EnsemblPlants:GSMUA_Achr5T15920_001	EnsemblPlantsGene:GSMUA_Achr5G15920_001	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF10	PFAM:PF13641
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0002968021	UniProt:M0SYX1	MapMan:21.2.3.1.1.1

Description

Glucomannan 4-beta-mannosyltransferase 9 [Source:GMGC_GENE;Acc:GSMUA_Achr5G15920_001]

Coordinates

chr5:+:12456360..12460466

Molecular Weight (calculated)

67501.7 Da

IEP (calculated)

9.784

GRAVY (calculated)

0.089

Length

600 amino acids

Sequence
(BLAST)

001: MDRLSSTAIL PEAFQGARDD ITEQLGVVWQ QIKAPVIVPP LRLSVLLCLA MSVMLFVEKV YMAVVIVLVK LFRRRPETRY KWEPMGDDAE LGNAAYPMVL
101: VQIPMYNEKE VYQLSIGAAC GLSWPSDRII IQVLDDSTDP AIKELVQIEC RRWASKGVNI KYEIRDNRNG YKAGALKEGM KHNYVKQCDY VAVFDADFQP
201: EPDFLWRTIP FLVHNPQIGL VQGRWKFVNS NECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGVW RIAALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFIFLGDLK VKSELPSTLK AYRYQQHRWS CGPANLFRKM AMDIARNKNV TLWTKVHVIY SFFFVRKIVA HIVTFVFYCV VIPATVLVPE VEVPNWGLVY
401: IPSTITLLNA VGTPRSLHLL VFWILFENVM SLHRAKATLI GLLEAGRVNE WVVTEKLGDV MKTKVAAKAA RKPRIRIGDR SGCIYWSSSQ EPISSSVAAT
501: TCLSGRTITT STSSSKQSPS SSSALVMLAP LFHKLSSSFL LGYIVAVLNL LAGSPVTAGG GGFSLKMNVR KQTSLDELWL LNLPNTLFTM FYLRKKKGKI

Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)

001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Arabidopsis Description

CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.