Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03760.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT5G03760.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009512.1-P | Field mustard | plasma membrane | 99.44 | 99.44 |
| CDY10358 | Canola | plasma membrane | 99.25 | 99.25 |
| CDY11268 | Canola | plasma membrane | 96.8 | 96.8 |
| AT5G03760.1 | Thale cress | plasma membrane | 94.17 | 94.0 |
| Solyc09g009010.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 46.99 | 83.61 |
| CDX80885 | Canola | plasma membrane | 82.14 | 83.24 |
| KRH67832 | Soybean | plasma membrane | 82.71 | 82.55 |
| KRG96119 | Soybean | plasma membrane | 82.71 | 82.55 |
| Solyc10g083670.1.1 | Tomato | plasma membrane | 81.77 | 81.61 |
| PGSC0003DMT400072644 | Potato | plasma membrane | 81.2 | 81.05 |
| GSMUA_Achr10P... | Banana | plasma membrane | 79.7 | 80.61 |
| VIT_08s0007g03990.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 81.58 | 80.37 |
| GSMUA_Achr2P20260_001 | Banana | plasma membrane | 79.32 | 79.17 |
| KRH20021 | Soybean | plasma membrane | 75.75 | 78.86 |
| KRH32645 | Soybean | plasma membrane | 75.75 | 78.86 |
| GSMUA_Achr10P... | Banana | plasma membrane | 78.95 | 78.8 |
| PGSC0003DMT400007050 | Potato | mitochondrion | 78.95 | 78.8 |
| GSMUA_Achr6P13400_001 | Banana | plasma membrane | 80.26 | 78.78 |
| CDX88785 | Canola | plasma membrane | 69.36 | 72.35 |
| CDY35710 | Canola | plasma membrane | 69.36 | 72.21 |
| CDX71011 | Canola | plasma membrane | 68.98 | 71.96 |
| CDY26949 | Canola | plasma membrane | 68.98 | 71.96 |
| CDY09164 | Canola | plasma membrane | 68.98 | 71.96 |
| CDX69464 | Canola | cytosol, peroxisome, plasma membrane | 56.02 | 67.27 |
| CDX70677 | Canola | cytosol, peroxisome, plasma membrane | 55.45 | 66.59 |
| GSMUA_Achr5P15920_001 | Banana | plasma membrane | 74.81 | 66.33 |
| CDX78675 | Canola | plasma membrane | 62.03 | 65.48 |
| CDY26505 | Canola | plasma membrane | 62.03 | 64.33 |
| CDY47369 | Canola | plasma membrane | 35.53 | 63.0 |
| CDY44151 | Canola | plasma membrane | 65.41 | 62.7 |
| CDY04707 | Canola | plasma membrane | 65.23 | 62.52 |
| CDY09672 | Canola | golgi | 41.17 | 62.22 |
| CDY32110 | Canola | mitochondrion | 51.32 | 62.05 |
| CDY32098 | Canola | plasma membrane | 63.16 | 61.88 |
| CDX79614 | Canola | plasma membrane | 63.53 | 61.34 |
| CDY68733 | Canola | plasma membrane | 31.2 | 61.03 |
| CDX72181 | Canola | plasma membrane | 59.96 | 60.99 |
| CDY54604 | Canola | plasma membrane | 59.96 | 60.88 |
| CDY40295 | Canola | plasma membrane | 61.28 | 59.71 |
| CDY01129 | Canola | plasma membrane | 59.59 | 58.92 |
| CDY40448 | Canola | plasma membrane | 63.91 | 57.43 |
| CDX90506 | Canola | plasma membrane | 57.52 | 55.33 |
| CDY47368 | Canola | endoplasmic reticulum, extracellular | 6.02 | 55.17 |
| CDX84607 | Canola | mitochondrion | 11.28 | 50.0 |
| CDY04011 | Canola | cytosol, peroxisome, plasma membrane | 39.66 | 46.17 |
| CDY00138 | Canola | cytosol, peroxisome, plasma membrane | 38.91 | 45.3 |
| CDY32100 | Canola | cytosol | 1.32 | 41.18 |
| CDY34018 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 41.92 | 39.33 |
| CDX92340 | Canola | plasma membrane | 68.8 | 38.73 |
| CDX76802 | Canola | plasma membrane | 44.17 | 35.61 |
| CDY57881 | Canola | extracellular | 8.27 | 35.2 |
| CDY34762 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 44.36 | 34.5 |
| CDX72314 | Canola | plasma membrane | 44.17 | 34.36 |
| CDY13445 | Canola | plasma membrane | 44.36 | 34.35 |
| CDY20029 | Canola | plasma membrane | 42.48 | 34.35 |
| CDX86448 | Canola | plasma membrane | 42.11 | 34.09 |
| CDX85189 | Canola | plasma membrane | 42.11 | 34.09 |
| CDX83148 | Canola | plasma membrane | 42.11 | 32.37 |
| CDY08003 | Canola | cytosol, peroxisome, plasma membrane | 42.11 | 32.23 |
| CDX74051 | Canola | cytosol, peroxisome, plasma membrane | 41.92 | 31.9 |
| CDX68766 | Canola | plasma membrane | 44.55 | 30.58 |
| CDY60854 | Canola | plasma membrane | 44.55 | 27.09 |
| CDX75177 | Canola | cytosol | 13.72 | 25.09 |
| CDY47235 | Canola | plasma membrane | 10.9 | 17.79 |
Protein Annotations
| EnsemblPlants:CDX70286 | EnsemblPlantsGene:GSBRNA2T00136434001 | Gene3D:3.90.550.10 | GO:A0A078C005 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR029044 | InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR32044 | PANTHER:PTHR32044:SF10 | PFAM:PF13641 |
| ProteinID:CDX70286 | ProteinID:CDX70286.1 | SUPFAM:SSF53448 | TMHMM:TMhelix | UniParc:UPI0004EEDF98 | MapMan:21.2.3.1.1.1 |
Description
BnaA10g26350D
Coordinates
chrLK031790:+:3936191..3941147
Molecular Weight (calculated)
60908.9 Da
IEP (calculated)
9.110
GRAVY (calculated)
0.125
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGDSSAVI PDSFMGYRDD FTMQMSMILD QIRAPLIVPV LRLAVYICLT MSVMLFVERV YMGIVISLVK LFGRKPEKRF KWEPMKDDIE LGNSVYPMVL
101: VQIPMYNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EPDYLWRTVP FLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKIVA HIVTFIFYCV VLPATVLVPE VIVPKWGAVY
401: IPSIITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDL KAKSATKAPK KLRFRFGDRI HVLELGVGMY LFSIGCYDAL
501: FGKNHYYLYL FAQAIAFFIA GCGQIGTVVP NY
101: VQIPMYNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EPDYLWRTVP FLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKIVA HIVTFIFYCV VLPATVLVPE VIVPKWGAVY
401: IPSIITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDL KAKSATKAPK KLRFRFGDRI HVLELGVGMY LFSIGCYDAL
501: FGKNHYYLYL FAQAIAFFIA GCGQIGTVVP NY
001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH
Arabidopsis Description
CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.