CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97739
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07330.1	CDX97739	AT3G16310.1	21798944
AT3G07330.1	CDY30157	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	99.71	99.71
CDY08003	Canola	cytosol, peroxisome, plasma membrane	98.43	98.99
AT3G07330.1	Thale cress	cytosol, peroxisome, plasma membrane	91.42	93.69
PGSC0003DMT400053633	Potato	endoplasmic reticulum, plasma membrane, vacuole	19.03	75.57
GSMUA_Achr6P27800_001	Banana	plasma membrane	68.1	73.68
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.96	73.32
CDY00138	Canola	cytosol, peroxisome, plasma membrane	47.64	72.87
CDY04011	Canola	cytosol, peroxisome, plasma membrane	46.92	71.77
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	76.11	70.65
KRH07420	Soybean	plasma membrane	70.39	70.49
KRH66156	Soybean	endoplasmic reticulum	71.24	70.44
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	56.65	69.84
PGSC0003DMT400095504	Potato	plasma membrane	47.93	66.87
CDX76802	Canola	plasma membrane	58.66	62.12
CDY57881	Canola	extracellular	11.02	61.6
CDX83148	Canola	plasma membrane	60.37	60.98
CDX85189	Canola	plasma membrane	57.22	60.88
CDY20029	Canola	plasma membrane	57.22	60.79
CDX86448	Canola	plasma membrane	57.08	60.73
CDX72314	Canola	plasma membrane	59.37	60.67
CDY13445	Canola	plasma membrane	59.37	60.41
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	58.94	60.23
CDX68766	Canola	plasma membrane	59.94	54.06
CDY60854	Canola	plasma membrane	60.09	48.0
CDY47235	Canola	plasma membrane	22.32	47.85
CDX75177	Canola	cytosol	19.74	47.42
CDY09672	Canola	golgi	22.6	44.89
CDY47369	Canola	plasma membrane	18.88	44.0
CDX69464	Canola	cytosol, peroxisome, plasma membrane	27.47	43.34
CDX70677	Canola	cytosol, peroxisome, plasma membrane	27.32	43.12
CDX70286	Canola	plasma membrane	31.9	41.92
CDY10358	Canola	plasma membrane	31.9	41.92
CDY11268	Canola	plasma membrane	31.76	41.73
CDX78675	Canola	plasma membrane	29.18	40.48
CDY54604	Canola	plasma membrane	30.33	40.46
CDY32110	Canola	mitochondrion	25.46	40.45
CDX88785	Canola	plasma membrane	29.47	40.39
CDY35710	Canola	plasma membrane	29.47	40.31
CDX79614	Canola	plasma membrane	31.76	40.29
CDY44151	Canola	plasma membrane	31.9	40.18
CDY26505	Canola	plasma membrane	29.47	40.16
CDX72181	Canola	plasma membrane	30.04	40.15
CDY04707	Canola	plasma membrane	31.76	40.0
CDY26949	Canola	plasma membrane	29.18	40.0
CDY09164	Canola	plasma membrane	29.18	40.0
CDX71011	Canola	plasma membrane	29.18	40.0
CDY32098	Canola	plasma membrane	31.04	39.96
CDY01129	Canola	plasma membrane	29.9	38.85
CDY68733	Canola	plasma membrane	15.02	38.6
CDY40295	Canola	plasma membrane	29.9	38.28
CDX90506	Canola	plasma membrane	30.19	38.16
CDY40448	Canola	plasma membrane	31.19	36.82
CDY47368	Canola	endoplasmic reticulum, extracellular	2.86	34.48
CDX80885	Canola	plasma membrane	25.89	34.48
CDY32100	Canola	cytosol	0.72	29.41
CDX84607	Canola	mitochondrion	5.01	29.17
CDX92340	Canola	plasma membrane	29.76	22.01

Protein Annotations

EnsemblPlants:CDX74051	EnsemblPlantsGene:GSBRNA2T00111797001	Gene3D:3.90.550.10	GO:A0A078CAG1	InterPro:Glyco_trans_2-like	InterPro:IPR029044
InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF14	PFAM:PF13632	ProteinID:CDX74051	ProteinID:CDX74051.1
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EE198B	MapMan:21.2.1.1.1	:

Description

BnaA03g29960D

Coordinates

chrLK031800:+:1087442..1091117

Molecular Weight (calculated)

79843.4 Da

IEP (calculated)

8.920

GRAVY (calculated)

0.065

Length

699 amino acids

Sequence
(BLAST)

001: MSRSQNEEFQ QWWNKQRNRD HDGGGGGGDD EAFLTVEIRT PAVDPTDKDR IRTRTLRQLS RLYLLRLKQL ASSSVWIASS FLHLLRTANR RIANDNPPSS
101: TSSARLYRLI KAFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEAAVEVAY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VAAMEYPAKP VGEGIRLEDY PMVLVQIPMC NEKEVYQQSI GAVCMLDWPK ERMLIQILDD SSELDVQVLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPAEFLK KTVPHFKGRE DLALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFMDILR SKVSVGKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFGS SYEWVVTKKL GRSSEADLIA YAESGSLVES
601: TNIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGLTFV IVGLDLIGEQ GEVAEKKGFH DDDLSLLWS

Best Arabidopsis Sequence Match ( AT3G07330.1 )
(BLAST)

001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS

Arabidopsis Description

CSLC6Probable xyloglucan glycosyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.