CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 4
plastid 1
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85189	golgi
CDX85826	golgi
CDX86448	golgi
CDX96540	golgi
CDY00138	golgi
CDY04011	golgi
CDY20029	golgi
CDY47235	golgi
CDY49114	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	CDX68187	AT1G74380.1	22665445
AT3G28180.1	CDX73082	AT1G74380.1	22665445
AT3G28180.1	CDX85826	AT1G74380.1	22665445
AT3G28180.1	CDX96540	AT1G74380.1	22665445
AT3G28180.1	CDY49114	AT1G74380.1	22665445
AT3G28180.1	CDX85189	AT3G28180.1	22665445
AT3G28180.1	CDX86448	AT3G28180.1	22665445
AT3G28180.1	CDY00138	AT3G28180.1	22665445
AT3G28180.1	CDY04011	AT3G28180.1	22665445
AT3G28180.1	CDY20029	AT3G28180.1	22665445
AT3G28180.1	CDY47235	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033039.1-P	Field mustard	plasma membrane	100.0	100.0
AT3G28180.1	Thale cress	plasma membrane	91.41	44.28
CDX86448	Canola	plasma membrane	88.96	44.14
CDX85189	Canola	plasma membrane	88.96	44.14
CDY20029	Canola	plasma membrane	86.5	42.86
CDY04011	Canola	cytosol, peroxisome, plasma membrane	59.2	42.23
CDY00138	Canola	cytosol, peroxisome, plasma membrane	57.06	40.7
VIT_14s0066g01730.t01	Wine grape	plasma membrane	69.02	33.89
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	66.26	32.73
KRG93391	Soybean	plasma membrane	66.26	32.73
Solyc02g089640.2.1	Tomato	plasma membrane	64.72	32.26
PGSC0003DMT400026046	Potato	plasma membrane	64.72	32.26
CDX84607	Canola	mitochondrion	10.74	29.17
CDY13445	Canola	plasma membrane	57.98	27.51
CDX72314	Canola	plasma membrane	57.67	27.49
CDY57881	Canola	extracellular	10.12	26.4
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	54.91	26.17
CDX76802	Canola	plasma membrane	52.45	25.91
CDX75177	Canola	cytosol	23.01	25.77
CDX83148	Canola	plasma membrane	53.68	25.29
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	43.87	25.22
CDX68766	Canola	plasma membrane	57.06	24.0
CDY08003	Canola	cytosol, peroxisome, plasma membrane	48.16	22.59
CDX74051	Canola	cytosol, peroxisome, plasma membrane	47.85	22.32
CDY60854	Canola	plasma membrane	56.75	21.14
CDY68733	Canola	plasma membrane	17.18	20.59
CDY47369	Canola	plasma membrane	12.88	14.0
CDX69464	Canola	cytosol, peroxisome, plasma membrane	17.48	12.87
CDY32110	Canola	mitochondrion	17.18	12.73
CDX70677	Canola	cytosol, peroxisome, plasma membrane	17.18	12.64
CDX80885	Canola	plasma membrane	18.4	11.43
CDY01129	Canola	plasma membrane	18.71	11.34
CDX79614	Canola	plasma membrane	19.02	11.25
CDY26505	Canola	plasma membrane	17.48	11.11
CDY11268	Canola	plasma membrane	18.1	11.09
CDY44151	Canola	plasma membrane	18.71	10.99
CDY04707	Canola	plasma membrane	18.71	10.99
CDY40295	Canola	plasma membrane	18.4	10.99
CDX78675	Canola	plasma membrane	16.87	10.91
CDX70286	Canola	plasma membrane	17.79	10.9
CDY10358	Canola	plasma membrane	17.79	10.9
CDX90506	Canola	plasma membrane	18.4	10.85
CDY32098	Canola	plasma membrane	17.79	10.68
CDX72181	Canola	plasma membrane	16.87	10.52
CDY54604	Canola	plasma membrane	16.56	10.31
CDY35710	Canola	plasma membrane	15.95	10.18
CDY09164	Canola	plasma membrane	15.64	10.0
CDY40448	Canola	plasma membrane	18.1	9.97
CDX71011	Canola	plasma membrane	15.34	9.8
CDY26949	Canola	plasma membrane	15.34	9.8
CDX88785	Canola	plasma membrane	15.34	9.8
CDY32100	Canola	cytosol	0.31	5.88
CDX92340	Canola	plasma membrane	15.64	5.4
CDY09672	Canola	golgi	1.84	1.7
CDY47368	Canola	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY47235	EnsemblPlantsGene:GSBRNA2T00086953001	GO:A0A078I8J3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR32044	PANTHER:PTHR32044:SF11	ProteinID:CDY47235	ProteinID:CDY47235.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025471FD	UniProt:A0A078I8J3	MapMan:35.1	:	:	:

Description

BnaA02g29210DBnaA02g29210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8J3]

Coordinates

chrLK032704:+:9021..10001

Molecular Weight (calculated)

37226.2 Da

IEP (calculated)

10.066

GRAVY (calculated)

0.209

Length

326 amino acids

Sequence
(BLAST)

001: MPPNSVAVTM EKPDNFSLLE INGSDQSSLP DNKRKSISPK QFSWFILLKA HRVVSCLSWL FSSVRKRITF SSKHLNEEED PKSRGKQMYR FIKACLVISI
101: VALSIEIVAH LIFLFFLLRK LILPFYSFTL FCIILPLTMF IPEAELPLWI ICYVPIFISL LNILPSPKSF PFLIPYLLFE NTMSITKFNA MISGLFQLGS
201: AYEWVVTKKT GRSSESDLLA FSEKEEKLHR RNSESGLELL SKLKEKEMNL AEQETSKKSI GGLMRSNNKM KKRNMVFKKE VGLAFLLLTA AARSFLSAHG
301: LHFYFLLFQG LSFLVVGLDL IGEQIS

Best Arabidopsis Sequence Match ( AT2G24630.2 )
(BLAST)

001: MAPRFDFSDL WAKETRRGTP VVVKMENPNY SIVEVEEPDS AFQPMEKSRG KNAKQVTWVL LLKAHKAVGC LTWVATVFWS LLGSVKRRLS FTHPLGSERL
101: GRDGWLFSAI KLFLVASLAI LAFELVAYYR GWHYFKNPNL HIPTSKLEIQ SLLHLFYVGW LSLRADYIAP PIKALSKFCI VLFLVQSVDR LILCLGCLWI
201: KFKKIKPRID EEHFRNDDFE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRLL VQVLDDSDDE SIQELIRDEV TKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEF VAIFDADFQP NSDFLKLTVP HFKEKPELGL VQARWAFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LRSILTSKIA MWKKANLILL FFLLRKLILP
501: FYSFTLFCVI LPITMFVPEA ELPIWVICYV PIFMSLLNIL PAPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLALTDK
601: ESEKMPNQIL RGVSDSELLE ISQVEEQKKQ PVSVKKTNKI FHKELALAFL LLTAAVRSLL ASQGVHFYFL LFQGLTFLLV GLDLIGEQMS

Arabidopsis Description

CSLC8Probable xyloglucan glycosyltransferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA2]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.