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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006343.1-P Field mustard plasma membrane 100.0 100.0
CDX70677 Canola cytosol, peroxisome, plasma membrane 85.91 97.74
CDX69464 Canola cytosol, peroxisome, plasma membrane 82.14 93.45
CDY26505 Canola plasma membrane 92.86 91.23
AT5G16190.4 Thale cress plasma membrane 89.48 83.99
CDY47369 Canola plasma membrane 49.6 83.33
CDY68733 Canola plasma membrane 44.25 81.99
CDY01129 Canola plasma membrane 80.16 75.09
CDY40295 Canola plasma membrane 80.75 74.54
CDY09672 Canola golgi 48.61 69.6
CDY47368 Canola endoplasmic reticulum, extracellular 7.54 65.52
CDX90506 Canola plasma membrane 71.43 65.1
CDX70286 Canola plasma membrane 65.48 62.03
CDY11268 Canola plasma membrane 65.48 62.03
CDY10358 Canola plasma membrane 65.48 62.03
CDY44151 Canola plasma membrane 67.46 61.26
CDY04707 Canola plasma membrane 67.06 60.9
CDX72181 Canola plasma membrane 62.7 60.42
CDY54604 Canola plasma membrane 62.1 59.73
CDY32098 Canola plasma membrane 61.71 57.27
CDY09164 Canola plasma membrane 57.34 56.67
CDY35710 Canola plasma membrane 57.34 56.56
CDX88785 Canola plasma membrane 56.94 56.27
CDY26949 Canola plasma membrane 56.94 56.27
CDX71011 Canola plasma membrane 56.75 56.08
CDY32110 Canola mitochondrion 48.81 55.91
CDX79614 Canola plasma membrane 59.52 54.45
CDX80885 Canola plasma membrane 56.55 54.29
CDY40448 Canola plasma membrane 62.1 52.87
CDX84607 Canola mitochondrion 10.32 43.33
CDY04011 Canola cytosol, peroxisome, plasma membrane 39.29 43.33
CDY00138 Canola cytosol, peroxisome, plasma membrane 38.69 42.67
CDY34018 Canola cytosol, endoplasmic reticulum, plasma membrane 42.26 37.57
CDY32100 Canola cytosol 1.19 35.29
CDX85189 Canola plasma membrane 42.26 32.42
CDX86448 Canola plasma membrane 42.26 32.42
CDY20029 Canola plasma membrane 42.06 32.22
CDX76802 Canola plasma membrane 41.67 31.82
CDX72314 Canola plasma membrane 42.66 31.43
CDY57881 Canola extracellular 7.74 31.2
CDY13445 Canola plasma membrane 42.06 30.86
CDY34762 Canola endoplasmic reticulum, peroxisome, plasma membrane 41.67 30.7
CDX83148 Canola plasma membrane 42.06 30.64
CDX92340 Canola plasma membrane 57.34 30.58
CDY08003 Canola cytosol, peroxisome, plasma membrane 40.48 29.35
CDX74051 Canola cytosol, peroxisome, plasma membrane 40.48 29.18
CDX68766 Canola plasma membrane 42.26 27.48
CDX75177 Canola cytosol 14.68 25.43
CDY60854 Canola plasma membrane 42.26 24.34
CDY47235 Canola plasma membrane 10.91 16.87
Protein Annotations
EnsemblPlants:CDX78675EnsemblPlantsGene:GSBRNA2T00130100001Gene3D:3.90.550.10GO:A0A078CP95InterPro:IPR029044InterPro:Nucleotide-diphossugar_trans
PANTHER:PTHR32044PANTHER:PTHR32044:SF21PFAM:PF13641ProteinID:CDX78675ProteinID:CDX78675.1SUPFAM:SSF53448
TMHMM:TMhelixUniParc:UPI000253F5F2MapMan:21.2.3.1.1.1:::
Description
BnaA03g05870D
Coordinates
chrLK031815:-:1783124..1786277
Molecular Weight (calculated)
58816.8 Da
IEP (calculated)
8.952
GRAVY (calculated)
0.215
Length
504 amino acids
Sequence
(BLAST)
001: METMWLRQAR SLLLVPLFKC LVAICLVISL LVFVESVYMN IVVIYVKLFK RKPEKIYKWE AMQEDIEVGN QNYPMVLVQI PMYNEREVFQ LSIGAACRLI
101: WPLDRVIIQV LDDSTDPTIM EMVSMECAKW ASKGINIKCE RRDNRNGYKA GALKQGMRHS YVKQCNYIAI FDADFQPEPD YLHRTVPFLI HNPELALVQA
201: RWKFVNANKC LMTRMQEMSL NYHFMAEQES GSTRHAFFGF NGTAGVWRLA GMEEAGGWKD RTTVEDMDLA VRVGLHGWKF VFVNDIEVKS ELPSQFKAFR
301: FQQHRWSCGP ANLFRKMTME IIHNKRVVIW KKLYVIYSFF FLRKILVHFF TFFFYCIVLP TSVFFYEVNI PTWSTIYVPF VITFFTAIAT PRSFYLVFFW
401: VLFENVMAMH RTKGTFIGLL EGGRVNEWVV TEKLGDALET KLLPQVKKPR NGILQRLNLK EMMVGIYILC CACYDFAFGS TLLYIYLFMQ ALAFIICGVG
501: FVGT
Best Arabidopsis Sequence Match ( AT5G16190.3 )
(BLAST)
001: MKTMWWRDMR SLLIVPMFKC LVAICLVISL LVFVESLYMN IVVIYVKLCK RKPEKIYKWE AMQEDLELGN QNFPMVLVQI PMYNEREVFK LSIGAACRLI
101: WPLDRLIVQV LDDSTDPTIM EMVSTECGKW ATKGINIKCE RRDNRNGYKA GALKQGMRHS YVKTCTYIAI FDADFQPEPD YLERTVPFLI HNPELALVQA
201: RWKFVNAKKC LMTRMQEMSL NYHFTAEQES GSTRHAFFGF NGTAGVWRLA AMEEAGGWKD RTTVEDMDLA VRVGLHGWKF VFVNDVSVKS ELPSQFKAFR
301: FQQHRWSCGP ANLFRKMTME IIRNKRVTIW KKLYVIYSFF FVRKIIVHFF TFFFYCFILP TSVFFPEVNI PTWSTVYFPF MITLFNAIAT PRSFYLVIFW
401: VLFENVMAMH RTKGTFIGLL EGGRVNEWVV TEKLGDALET KLLPQVRKPR NGFLERINSK EMMVGIYILC CASYNLVFGK TVLYIYLYMQ ALAFIIAGIG
501: FIGT
Arabidopsis Description
ATCSLA11cellulose synthase like A11 [Source:TAIR;Acc:AT5G16190]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.