CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31590.1	CDX70995	AT5G22290.1	21798944
AT4G31590.1	CDX88803	AT5G22290.1	21798944
AT4G31590.1	CDX92368	AT5G22290.1	21798944
AT4G31590.1	CDY09128	AT5G22290.1	21798944
AT4G31590.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G31590.1	Thale cress	plasma membrane	86.32	96.68
CDY13445	Canola	plasma membrane	85.68	96.65
CDX72314	Canola	plasma membrane	84.9	96.2
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	76.65	86.84
CDX76802	Canola	plasma membrane	73.68	86.52
CDY60854	Canola	plasma membrane	93.29	82.63
VIT_04s0069g00780.t01	Wine grape	plasma membrane	73.16	81.7
KRH61950	Soybean	plasma membrane	71.87	80.38
CDY57881	Canola	extracellular	12.9	80.0
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	71.48	79.94
KRH52609	Soybean	plasma membrane	71.35	79.8
CDY04011	Canola	cytosol, peroxisome, plasma membrane	46.84	79.43
CDY00138	Canola	cytosol, peroxisome, plasma membrane	46.45	78.77
KRH16165	Soybean	plasma membrane	69.29	77.49
Os08t0253800-01	Rice	cytosol, peroxisome, plasma membrane	47.87	77.45
KRH04930	Soybean	plasma membrane	68.65	76.77
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	68.52	76.51
Solyc08g006310.2.1	Tomato	golgi, peroxisome, plasma membrane	68.26	76.22
Bra011284.1-P	Field mustard	plasma membrane	93.42	74.56
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	52.65	71.96
CDX85189	Canola	plasma membrane	58.97	69.56
CDX86448	Canola	plasma membrane	58.84	69.41
CDY20029	Canola	plasma membrane	58.19	68.54
CDX83148	Canola	plasma membrane	60.26	67.49
HORVU3Hr1G000340.2	Barley	plasma membrane	55.35	66.41
TraesCSU01G038900.1	Wheat	cytosol, peroxisome, plasma membrane	62.06	64.13
TraesCS3B01G000600.1	Wheat	cytosol, peroxisome, plasma membrane	62.06	64.05
KRH57821	Soybean	plasma membrane	19.87	63.9
Zm00001d049336_P001	Maize	plasma membrane	62.71	63.61
Zm00001d024178_P002	Maize	cytosol, peroxisome, plasma membrane	62.06	63.54
TraesCS3D01G010500.1	Wheat	cytosol, peroxisome, plasma membrane	61.94	63.32
KXG24822	Sorghum	peroxisome	61.81	63.03
CDY08003	Canola	cytosol, peroxisome, plasma membrane	54.32	60.58
CDX74051	Canola	cytosol, peroxisome, plasma membrane	54.06	59.94
CDY47235	Canola	plasma membrane	24.0	57.06
CDX75177	Canola	cytosol	19.23	51.2
CDY32100	Canola	cytosol	1.03	47.06
CDY09672	Canola	golgi	20.52	45.17
CDX69464	Canola	cytosol, peroxisome, plasma membrane	25.81	45.15
CDX70677	Canola	cytosol, peroxisome, plasma membrane	25.81	45.15
CDY10358	Canola	plasma membrane	30.71	44.74
CDY11268	Canola	plasma membrane	30.71	44.74
CDX70286	Canola	plasma membrane	30.58	44.55
CDY47369	Canola	plasma membrane	17.16	44.33
CDX78675	Canola	plasma membrane	27.48	42.26
CDY26505	Canola	plasma membrane	27.74	41.91
CDY35710	Canola	plasma membrane	27.35	41.49
CDY40295	Canola	plasma membrane	29.16	41.39
CDY47368	Canola	endoplasmic reticulum, extracellular	3.1	41.38
CDY09164	Canola	plasma membrane	27.1	41.18
CDX88785	Canola	plasma membrane	27.1	41.18
CDY32110	Canola	mitochondrion	23.35	41.14
CDY01129	Canola	plasma membrane	28.52	41.08
CDX79614	Canola	plasma membrane	29.16	41.02
CDX71011	Canola	plasma membrane	26.97	40.98
CDY26949	Canola	plasma membrane	26.97	40.98
CDX72181	Canola	plasma membrane	27.35	40.54
CDY32098	Canola	plasma membrane	28.39	40.52
CDY44151	Canola	plasma membrane	28.77	40.18
CDY04707	Canola	plasma membrane	28.77	40.18
CDY54604	Canola	plasma membrane	27.1	40.08
CDX90506	Canola	plasma membrane	27.35	38.34
CDY68733	Canola	plasma membrane	13.29	37.87
CDY40448	Canola	plasma membrane	28.9	37.84
CDX80885	Canola	plasma membrane	25.03	36.95
CDX84607	Canola	mitochondrion	4.13	26.67
CDX92340	Canola	plasma membrane	27.23	22.33

Protein Annotations

EnsemblPlants:CDX68766	EnsemblPlantsGene:GSBRNA2T00130467001	Gene3D:3.90.550.10	GO:A0A078BVA8	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
ncoils:Coil	PANTHER:PTHR32044	PANTHER:PTHR32044:SF7	PFAM:PF13641	ProteinID:CDX68766	ProteinID:CDX68766.1
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EE81D8	MapMan:21.2.1.1.1	:

Description

BnaC01g06870D

Coordinates

chrLK031789:-:1153690..1159906

Molecular Weight (calculated)

88395.5 Da

IEP (calculated)

8.809

GRAVY (calculated)

0.201

Length

775 amino acids

Sequence
(BLAST)

001: MYLVLVENYW RVSKFCIAIA RKVFLLAVLG DSRSFTGYGG LCSTSQCFFA PLLTTTIVGV LKGVGSTTLG FVLLGGVEVH ALNMAPRLDF SDWWAKDTRK
101: GTPVVVKMEN PNYSVVEIQG PDSAFRPVEK SRGKNAKQVT WVLLLKAHRA VGCLTWFATV FWSLLGAIKK RLSFTHPLGS ERLGRDRWLF TAIKLFLALS
201: LLILGFEIVA YFRGWHYFES PSLHIPTSTL EIQSLLHLVY VGWLGLRADY IAPPIKALSK FCIVLFLIQS VDRLILCLGC FWIKYKKIKP RFDEEPFRND
301: DAEGCGYAYP MVLVQIPMCN EREVYEQSIS AVCQLDWPKD RILVQVLDDS NDESIQQLIK AEVAKWSQKG VNIIYRHRLV RTGYKAGNLK SAMSCDYVEA
401: YEFVAIFDAD FQPNPDFLKL TVPHFKDNPE LGLVQARWTF VNKDENLLTR LQNINLCFHF EVEQQVSGVF LNFFGFNGTA GVWRIKALEE SGGWLERTTV
501: EDMDIAVRAH LHGWKFIYLN DVKVLCEVPE SYEAYKKQQH RWHSGPMQLF RLCLGAILTS KIAIWKKANL ILLFFLLRKL ILPFYSFTLF CIILPLTMFV
601: PEAELPVWVI CYIPVFMSFL NLLPSPKSFP FIVPYLLFEN TMSVTKFNAM VSGLFQLGSS YEWIVTKKAG RSSESDLLSI TEKETPNKRS QLLRGVSDSE
701: LLELNQLEEQ KQAVAKKPVK KINKIYHKEL ALAFLLLTAA VRSLLAAQGV HFYFLMFQGV TFLLVGLDLI GEQMS

Best Arabidopsis Sequence Match ( AT4G31590.1 )
(BLAST)

001: MAPRLDFSDW WAKDTRKGTP VVVKMENPNY SVVEIDGPDS AFRPVEKSRG KNAKQVTWVL LLKAHRAVGC LTWLATVFWS LLGAIKKRLS FTHPLGSEKL
101: GRDRWLFTAI KLFLAVSLVI LGFEIVAYFR GWHYFQSPSL HIPTSTLEIQ SLFHLVYVGW LTLRADYIAP PIKALSKFCI VLFLIQSVDR LVLCLGCFWI
201: KYKKIKPRFD EEPFRNDDAE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRIL VQVLDDSNDE SIQQLIKAEV AKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEY VAIFDADFQP TPDFLKLTVP HFKDNPELGL VQARWTFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LGSILTSKIA IWKKANLILL FFLLRKLILP
501: FYSFTLFCII LPLTMFVPEA ELPVWVICYI PVFMSFLNLL PSPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLSITEK
601: ETPTKKSQLL RGVSDSELLE LSQLEEQKQA VSKKPVKKTN KIYHKELALA FLLLTAALRS LLAAQGVHFY FLLFQGVTFL LVGLDLIGEQ MS

Arabidopsis Description

CSLC5CSLC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UYZ0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.