Factsheet for Solyc08g006310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

cytosol 1
golgi 2
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31590.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G31590.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	98.27	98.27
VIT_04s0069g00780.t01	Wine grape	plasma membrane	80.84	80.84
KRH61950	Soybean	plasma membrane	79.97	80.09
KRH52609	Soybean	plasma membrane	79.39	79.51
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	77.81	77.92
AT4G31590.1	Thale cress	plasma membrane	77.67	77.89
CDX72314	Canola	plasma membrane	75.65	76.75
Bra007838.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	72.91	76.67
CDX76802	Canola	plasma membrane	72.77	76.52
CDY13445	Canola	plasma membrane	75.5	76.27
Bra023993.1-P	Field mustard	plasma membrane	73.05	76.24
KRH16165	Soybean	plasma membrane	75.65	75.76
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	74.5	75.58
Os08t0253800-01	Rice	cytosol, peroxisome, plasma membrane	52.16	75.57
AT2G24630.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	75.07	75.51
KRH04930	Soybean	plasma membrane	74.93	75.04
Solyc02g089640.2.1	Tomato	plasma membrane	65.27	69.27
CDY57881	Canola	extracellular	12.39	68.8
CDX68766	Canola	plasma membrane	76.22	68.26
HORVU3Hr1G000340.2	Barley	plasma membrane	60.66	65.17
Solyc12g088240.1.1	Tomato	cytosol, peroxisome, plasma membrane	64.27	64.83
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	63.4	64.14
TraesCSU01G038900.1	Wheat	cytosol, peroxisome, plasma membrane	68.59	63.47
TraesCS3B01G000600.1	Wheat	cytosol, peroxisome, plasma membrane	68.3	63.12
Zm00001d049336_P001	Maize	plasma membrane	69.31	62.96
TraesCS3D01G010500.1	Wheat	cytosol, peroxisome, plasma membrane	68.59	62.8
KRH57821	Soybean	plasma membrane	21.76	62.66
KXG24822	Sorghum	peroxisome	68.44	62.5
Zm00001d024178_P002	Maize	cytosol, peroxisome, plasma membrane	68.16	62.48
Solyc04g077470.2.1	Tomato	plasma membrane	65.71	61.46
CDY60854	Canola	plasma membrane	76.51	60.69
Bra011284.1-P	Field mustard	plasma membrane	76.22	54.48
Solyc05g055410.1.1	Tomato	plasma membrane	34.44	45.44
Solyc11g007600.1.1	Tomato	plasma membrane	33.86	44.42
Solyc06g074630.2.1	Tomato	plasma membrane	34.01	44.28
Solyc10g083670.1.1	Tomato	plasma membrane	33.57	43.71
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	18.73	43.48
Solyc11g066820.1.1	Tomato	plasma membrane	32.71	43.32

Protein Annotations

EnsemblPlants:Solyc08g006310.2.1	EnsemblPlantsGene:Solyc08g006310.2	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Glyco_trans_2-like	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF7	PFAM:PF13632
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000276BE69	UniProt:K4CIC0	MapMan:21.2.1.1.1

Description

No Description!

Coordinates

chr8:+:974337..978244

Molecular Weight (calculated)

79200.1 Da

IEP (calculated)

8.796

GRAVY (calculated)

0.112

Length

694 amino acids

Sequence
(BLAST)

001: MAPRLNFSDW WGKDKERGTP VIVKMENPNF SIVEIDGPDA AFKPIEKSRG KNAKQVTWVL LLKANQAVGC VAWLATILWG LIGTIKNRLI LRKGVSVASE
101: KLGKSNLLFR IIKVCLGVSL VMLAFEVIAY FKGWHYFQNP NLYIPHTSDV LGLFHIIYVA WLDFRADYIA PSVQKLSTFC TVLFLIQSLD RLVLCLGCFY
201: IKCKKIKPRI EGDPFKSDDL EGSNNGYYPM VLVQIPMCNE REVYEMSISA VCQLDWPKDR LLIQILDDSD NECIQELIKS EVAKWNQKGV NIIYRHRLVR
301: TGYKAGNLKS AMSCDYVKDY EFVAIFDADF QPTPDFLKQT VPHFKDNPEL GLVQTRWAFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG
401: IWRIKALEES GGWLERTTVE DMDIAVRAHL NGWKFIYLND VRVLCEVPES FEAYRKQQHR WHSGPMQLFR VCLPAIVSSK ISIWKKANLI LLFFLLRKLI
501: LPFYSFTLFC VVLPLTMFIP EAKLPFWVVC YIPILMTLLN ILPAPKSIPF IAPYLLFENT MSVTKFNAMV SGLFQLGSSY EWVVTKKAGR SSEPDLLAAA
601: EKDLKAFGAP QISRGASESE LSELNRLNKQ KDETSTPVKK SNKIYRKELA LSFLLLTASA RSLLSAHGLH FYFLLFQGVT FLLVGLDLIG EQIS

Best Arabidopsis Sequence Match ( AT4G31590.1 )
(BLAST)

001: MAPRLDFSDW WAKDTRKGTP VVVKMENPNY SVVEIDGPDS AFRPVEKSRG KNAKQVTWVL LLKAHRAVGC LTWLATVFWS LLGAIKKRLS FTHPLGSEKL
101: GRDRWLFTAI KLFLAVSLVI LGFEIVAYFR GWHYFQSPSL HIPTSTLEIQ SLFHLVYVGW LTLRADYIAP PIKALSKFCI VLFLIQSVDR LVLCLGCFWI
201: KYKKIKPRFD EEPFRNDDAE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRIL VQVLDDSNDE SIQQLIKAEV AKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEY VAIFDADFQP TPDFLKLTVP HFKDNPELGL VQARWTFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LGSILTSKIA IWKKANLILL FFLLRKLILP
501: FYSFTLFCII LPLTMFVPEA ELPVWVICYI PVFMSFLNLL PSPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLSITEK
601: ETPTKKSQLL RGVSDSELLE LSQLEEQKQA VSKKPVKKTN KIYHKELALA FLLLTAALRS LLAAQGVHFY FLLFQGVTFL LVGLDLIGEQ MS

Arabidopsis Description

CSLC5CSLC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UYZ0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.