Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- endoplasmic reticulum 2
- golgi 2
- extracellular 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060105 | Potato | cytosol | 79.66 | 96.99 |
| Solyc11g007600.1.1 | Tomato | plasma membrane | 73.76 | 73.35 |
| Solyc09g009010.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 41.44 | 72.91 |
| TraesCS7D01G389400.1 | Wheat | plasma membrane | 69.77 | 71.68 |
| TraesCS7A01G394000.1 | Wheat | plasma membrane | 70.15 | 71.24 |
| Solyc10g083670.1.1 | Tomato | plasma membrane | 71.86 | 70.92 |
| TraesCS7B01G296100.1 | Wheat | mitochondrion, plasma membrane | 69.96 | 70.91 |
| HORVU7Hr1G092910.2 | Barley | plasma membrane | 67.87 | 69.32 |
| TraesCS7B01G295800.1 | Wheat | plasma membrane | 67.68 | 69.13 |
| TraesCS7A01G394100.1 | Wheat | plasma membrane | 67.87 | 68.92 |
| HORVU7Hr1G092990.4 | Barley | endoplasmic reticulum | 62.36 | 68.76 |
| TraesCS7A01G393800.1 | Wheat | plasma membrane | 67.3 | 68.74 |
| TraesCS7D01G389500.1 | Wheat | plasma membrane, plastid | 67.68 | 68.07 |
| GSMUA_Achr6P07540_001 | Banana | plasma membrane | 68.25 | 67.99 |
| Os06t0625700-01 | Rice | plasma membrane | 67.87 | 67.74 |
| Zm00001d046681_P001 | Maize | plasma membrane | 67.68 | 67.68 |
| TraesCS7B01G296000.1 | Wheat | plasma membrane, plastid | 67.11 | 67.62 |
| Solyc11g066820.1.1 | Tomato | plasma membrane | 66.16 | 66.41 |
| KXG20409 | Sorghum | plasma membrane, plastid | 67.3 | 66.04 |
| Solyc06g074630.2.1 | Tomato | plasma membrane | 65.97 | 65.1 |
| TraesCS7D01G389100.1 | Wheat | plasma membrane | 64.64 | 61.26 |
| Solyc02g089640.2.1 | Tomato | plasma membrane | 43.35 | 34.86 |
| Solyc08g006310.2.1 | Tomato | golgi, peroxisome, plasma membrane | 45.44 | 34.44 |
| Solyc09g057640.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 42.4 | 32.51 |
| Solyc12g088240.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 42.4 | 32.41 |
| Solyc04g077470.2.1 | Tomato | plasma membrane | 44.3 | 31.4 |
Protein Annotations
| EnsemblPlants:Solyc05g055410.1.1 | EnsemblPlantsGene:Solyc05g055410.1 | Gene3D:3.90.550.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Glyco_trans_2-like | InterPro:IPR029044 | InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR32044 | PANTHER:PTHR32044:SF21 | PFAM:PF13632 |
| SUPFAM:SSF53448 | TMHMM:TMhelix | UniParc:UPI000276708D | UniProt:K4C2L7 | MapMan:21.2.3.1.1.1 | : |
Description
No Description!
Coordinates
chr5:-:65062966..65067341
Molecular Weight (calculated)
61021.1 Da
IEP (calculated)
9.623
GRAVY (calculated)
0.139
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLNIYFDHG ITSQIGLFWQ QVRAPLLVPF LKIMVILCLA MSLMLFVDKV YMGIVIIFIK ILRKKPEKKY KWEPIKDDLE LANSSYPMVL IQIPMYNERE
101: VYQLSIGAAC NLSWPANRIL IQVLDDSTDP IIKVMVEQEC KRWASKGVNI KYEIRDNRKG YKAGALKEGM KHNYVKMCDF VAIFDADFQP EFDFLLRTVP
201: FLVHNPEIGL VQARWKFVNS DECLLTRMQE MSLDYHFKVE QEVGSSNHAF FGFNGTAGVW RISALNEAGG WKDRTTVEDM DLAVRAGLKG WKFVYIGDLK
301: VKNELPSTFK AYRYQQHRWS CGPANLFKKM VGEIASNKKV SIWKRFYLIY SFFFVRKIIA HMVTFIFYCV IIPTTVLIPE VQVPIWGAVY IPSTITLLNA
401: VGTPRSFYLL IFWILFENVM SLHRTRATFI GLFEVGRVNE WVVTEKLGDG IKAKTSTKGS RRSRFRIGEW YNKVHFVEVF VGLYLMLCGW YDYSFGKNRF
501: YIYLFLQGVA FLVAGFGYIG VFVPNS
101: VYQLSIGAAC NLSWPANRIL IQVLDDSTDP IIKVMVEQEC KRWASKGVNI KYEIRDNRKG YKAGALKEGM KHNYVKMCDF VAIFDADFQP EFDFLLRTVP
201: FLVHNPEIGL VQARWKFVNS DECLLTRMQE MSLDYHFKVE QEVGSSNHAF FGFNGTAGVW RISALNEAGG WKDRTTVEDM DLAVRAGLKG WKFVYIGDLK
301: VKNELPSTFK AYRYQQHRWS CGPANLFKKM VGEIASNKKV SIWKRFYLIY SFFFVRKIIA HMVTFIFYCV IIPTTVLIPE VQVPIWGAVY IPSTITLLNA
401: VGTPRSFYLL IFWILFENVM SLHRTRATFI GLFEVGRVNE WVVTEKLGDG IKAKTSTKGS RRSRFRIGEW YNKVHFVEVF VGLYLMLCGW YDYSFGKNRF
501: YIYLFLQGVA FLVAGFGYIG VFVPNS
001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH
Arabidopsis Description
CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.