Factsheet for Solyc12g088240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 2
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030125	Potato	plasma membrane	94.33	97.45
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	65.41	79.37
Os01t0766900-01	Rice	golgi, plasma membrane	19.77	79.07
Solyc04g077470.2.1	Tomato	plasma membrane	84.3	78.17
VIT_18s0001g08580.t01	Wine grape	cytosol, peroxisome, plasma membrane	78.05	76.82
AT4G07960.1	Thale cress	plasma membrane	77.91	76.68
Bra000635.1-P	Field mustard	plasma membrane	76.31	75.87
CDX83148	Canola	plasma membrane	76.16	75.72
GSMUA_Achr6P30200_001	Banana	cytosol	67.88	75.69
GSMUA_Achr7P00750_001	Banana	plasma membrane	68.31	75.32
GSMUA_Achr5P01920_001	Banana	plasma membrane	70.2	75.0
KRH15467	Soybean	plasma membrane	76.02	74.82
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	67.44	74.6
KRH52142	Soybean	plasma membrane	76.02	74.08
KRH61452	Soybean	plasma membrane	76.02	73.87
GSMUA_Achr4P32270_001	Banana	plasma membrane	68.17	73.51
Os03t0770800-01	Rice	plasma membrane	62.21	71.81
GSMUA_Achr4P23120_001	Banana	cytosol, peroxisome, plasma membrane	72.53	70.88
Os05t0510800-01	Rice	plasma membrane	70.2	70.2
EER90820	Sorghum	plasma membrane	69.77	69.36
KXG22328	Sorghum	plasma membrane	70.06	69.15
KXG33450	Sorghum	mitochondrion, peroxisome, plasma membrane	69.19	69.09
Zm00001d012666_P003	Maize	plasma membrane	68.75	68.75
Zm00001d043336_P001	Maize	plasma membrane	68.02	68.52
TraesCS5A01G405700.1	Wheat	mitochondrion	69.91	68.42
Zm00001d034205_P001	Maize	plasma membrane	70.49	68.41
Zm00001d013168_P001	Maize	plasma membrane	67.73	67.93
Zm00001d038676_P001	Maize	plasma membrane	69.04	67.66
TraesCS5B01G410400.1	Wheat	mitochondrion	69.91	67.56
TraesCS1A01G331800.1	Wheat	plasma membrane	68.6	67.24
HORVU1Hr1G077230.2	Barley	plasma membrane	68.17	67.1
TraesCS1D01G334400.1	Wheat	plasma membrane	68.46	67.09
TraesCS1B01G345400.1	Wheat	plasma membrane	68.46	67.09
HORVU3Hr1G074570.1	Barley	plasma membrane	67.44	66.67
HORVU1Hr1G067470.1	Barley	plasma membrane	66.13	66.23
TraesCS3B01G337100.1	Wheat	plasma membrane	67.15	66.19
TraesCS3A01G299500.1	Wheat	plasma membrane	67.59	66.05
TraesCS3D01G302300.1	Wheat	plasma membrane	67.15	65.62
TraesCS1D01G312700.1	Wheat	plasma membrane	65.55	65.36
TraesCS1A01G312600.1	Wheat	mitochondrion, plasma membrane	65.55	65.36
TraesCS5D01G415700.1	Wheat	mitochondrion	69.91	65.35
Os07t0124750-00	Rice	plasma membrane	67.88	65.31
TraesCS1B01G324200.1	Wheat	mitochondrion	65.12	64.93
Solyc08g006310.2.1	Tomato	golgi, peroxisome, plasma membrane	64.83	64.27
KXG34323	Sorghum	plasma membrane	63.23	63.78
Solyc02g089640.2.1	Tomato	plasma membrane	60.32	63.46
Solyc09g057640.2.1	Tomato	cytosol, peroxisome, plasma membrane	61.48	61.66
Solyc11g007600.1.1	Tomato	plasma membrane	33.87	44.05
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	18.46	42.47
Solyc05g055410.1.1	Tomato	plasma membrane	32.41	42.4
Solyc10g083670.1.1	Tomato	plasma membrane	32.41	41.84
Solyc06g074630.2.1	Tomato	plasma membrane	31.69	40.9
Solyc11g066820.1.1	Tomato	plasma membrane	31.1	40.84

Protein Annotations

EnsemblPlants:Solyc12g088240.1.1	EnsemblPlantsGene:Solyc12g088240.1	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF45	PFAM:PF13641	SEG:seg
SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000276AB40	UniProt:K4DGP5	MapMan:21.2.1.1.1	:

Description

No Description!

Coordinates

chr12:+:63690310..63693004

Molecular Weight (calculated)

78912.2 Da

IEP (calculated)

8.754

GRAVY (calculated)

0.043

Length

688 amino acids

Sequence
(BLAST)

001: MAPPFSWWGG KETQRGTPVV VKMENPNNWS MVELETPSED GSFLLTKGEK VKNKNAKQLT WVLLLKAHKA AGCLTSIASA LFSFGSVIRR RVATGKTDSS
101: TSNSWFYSCI KVIVWLSLIL LGFEIAAYYK GWHFSTYDLH IQHLYTMANP LAVKGVFDLL YSIWVVVRVE YFAPILRSLA NVCIVLFFIQ SFDRLILCLG
201: CLWIRIWKIK PVLKDSPLDL EDGDGGYYPM VLVQIPMCNE KEVYQQAIAA MSSLEWPKSK LLIQILDDSD DSTTQMLIKE EVHKWQKDGV NIVYRHRVIR
301: EGYKAGNLKS AMNCSYVKDY EFVAIFDADF QPSPDFLKRT VPYFKDNEDI GLVQARWSFV NKEENLLTRL QHINLAFHFE VEQQVNGIFL NFFGFNGTAG
401: VWRIKALEGS GGWLERTTVE DMDIAVRAHL HGWKFIFLND VECQCEVPES YEAYRKQQHR WHSGPMQLFR LCFPAILESN ISIWKKGNLI FLFFLLRKLI
501: LPFYSFTLFC IILPITMFVP EATLPTWVVS YVPATMSFLN ILPSPKSFPF IVPYLLFENT MSVTKFNAMI SGLFQLGSSY EWIVTKKSGR SSEGDLSLLV
601: DEKPKHQRGT SEPNLGDLKE EIKQKARKSS RKKKHNRIYK KELALAFLLL TAAVRSLLSA QGIHFYFLLF QGISFLLVGL DLIGEQVD

Best Arabidopsis Sequence Match ( AT4G07960.1 )
(BLAST)

001: MAPKFEWWAK GNNNNTRKGT PVVVKMENPN NWSMVELESP SHDDFLVRTH EKSRNKNARQ LTWVLLLKAH RAAGCLTSLG SALFALGTAV RRRIAAGRTD
101: IEISSSGVGS LQKQNHTKKS KLFYSCLKVF LWLSLILLGF EIAAYFKGWS FGTSKLQLQF IFNKGFFDWV YTRWVLLRVE YLAPPLQFLA NGCIVLFLVQ
201: SLDRLILCLG CFWIRFKKIK PVPKPDSISD LESGDNGAFL PMVLVQIPMC NEKEVYQQSI AAVCNLDWPK GKILIQILDD SDDPITQSLI KEEVHKWQKL
301: GARIVYRHRV NREGYKAGNL KSAMNCSYVK DYEFVAIFDA DFQPLPDFLK KTIPHFKDNE EIGLVQARWS FVNKEENLLT RLQNINLAFH FEVEQQVNSV
401: FLNFFGFNGT AGVWRIKALE DSGGWLERTT VEDMDIAVRA HLHGWKFVFL NDVECQCELP ESYEAYRKQQ HRWHSGPMQL FRLCLPAVIK SKISIGKKFN
501: LIFLFFLLRK LILPFYSFTL FCIILPMTMF VPEAELPAWV VCYIPATMSF LNILPAPKSF PFIVPYLLFE NTMSVTKFNA MVSGLFQLGS AYEWVVTKKS
601: GRSSEGDLAA LVEKDEKTTK HQRGVSAPET EAEKKAEKTK RKKKKHNRIY MKELSLAFLL LTAATRSLLS AQGIHFYFLL FQGISFLLVG LDLIGEQVE

Arabidopsis Description

CSLC12CSLC12 [Source:UniProtKB/TrEMBL;Acc:A0A178UW53]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.