Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- golgi 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g005270.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03760.1 | Solyc08g005270.2.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007050 | Potato | mitochondrion | 99.33 | 55.72 |
| Solyc10g083670.1.1 | Tomato | plasma membrane | 88.63 | 49.72 |
| GSMUA_Achr10P... | Banana | plasma membrane | 84.28 | 47.91 |
| GSMUA_Achr2P20260_001 | Banana | plasma membrane | 84.62 | 47.47 |
| KRH67832 | Soybean | plasma membrane | 84.62 | 47.47 |
| KRG96119 | Soybean | plasma membrane | 84.62 | 47.47 |
| CDY10358 | Canola | plasma membrane | 83.95 | 47.18 |
| CDY11268 | Canola | plasma membrane | 83.95 | 47.18 |
| Bra005779.1-P | Field mustard | plasma membrane | 83.61 | 46.99 |
| Bra009512.1-P | Field mustard | plasma membrane | 83.61 | 46.99 |
| CDX70286 | Canola | plasma membrane | 83.61 | 46.99 |
| VIT_08s0007g03990.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 84.62 | 46.85 |
| GSMUA_Achr6P13400_001 | Banana | plasma membrane | 84.62 | 46.68 |
| GSMUA_Achr10P... | Banana | plasma membrane | 82.94 | 46.53 |
| AT5G03760.1 | Thale cress | plasma membrane | 82.61 | 46.34 |
| KRH32645 | Soybean | plasma membrane | 75.25 | 44.03 |
| KRH20021 | Soybean | plasma membrane | 74.58 | 43.64 |
| Solyc11g066820.1.1 | Tomato | plasma membrane | 73.58 | 41.98 |
| Solyc05g055410.1.1 | Tomato | plasma membrane | 72.91 | 41.44 |
| Solyc06g074630.2.1 | Tomato | plasma membrane | 73.58 | 41.28 |
| Solyc11g007600.1.1 | Tomato | plasma membrane | 68.56 | 38.75 |
| GSMUA_Achr5P15920_001 | Banana | plasma membrane | 74.92 | 37.33 |
| CDX80885 | Canola | plasma membrane | 64.21 | 36.57 |
| Solyc02g089640.2.1 | Tomato | plasma membrane | 42.47 | 19.42 |
| Solyc08g006310.2.1 | Tomato | golgi, peroxisome, plasma membrane | 43.48 | 18.73 |
| Solyc12g088240.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 42.47 | 18.46 |
| Solyc09g057640.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 41.81 | 18.22 |
| Solyc04g077470.2.1 | Tomato | plasma membrane | 43.81 | 17.66 |
Protein Annotations
| EnsemblPlants:Solyc09g009010.2.1 | EnsemblPlantsGene:Solyc09g009010.2 | Gene3D:3.90.550.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Glyco_trans_2-like | InterPro:IPR029044 | InterPro:Nucleotide-diphossugar_trans | PANTHER:PTHR32044 | PANTHER:PTHR32044:SF10 | PFAM:PF13632 |
| SUPFAM:SSF53448 | TMHMM:TMhelix | UniParc:UPI000276C2D7 | UniProt:K4CQT2 | MapMan:50.2.4 | : |
Description
No Description!
Coordinates
chr9:+:2362995..2365231
Molecular Weight (calculated)
34134.0 Da
IEP (calculated)
10.041
GRAVY (calculated)
0.303
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRMQEMSLD YHFSVEQEVG SSTHAFFGFN GTAGVWRIAA IDEAGGWKDR TTVEDMDLAV RASLKGWKFL FLGSVKVKNE LPSTLKAYRY QQHRWSCGPA
101: NLFRKMCMEI IRNKKVSLWK KVHVIYSFFF VRKVVAHIVT FVFYVVVLPA TVLVPEVEVP KWGAVYIPAI ITLLNAVGTP RSLHLLVFWI LFENVMSLHR
201: TKATFIGLLE AGRVNEWIVT EKLGDALKLK SATKAFKKHR MRLGDRIHLL EFAAGAYLFF CGCYDIAFGT NHYFLYLFIQ AFAFLIVGFG YVGTFVPNS
101: NLFRKMCMEI IRNKKVSLWK KVHVIYSFFF VRKVVAHIVT FVFYVVVLPA TVLVPEVEVP KWGAVYIPAI ITLLNAVGTP RSLHLLVFWI LFENVMSLHR
201: TKATFIGLLE AGRVNEWIVT EKLGDALKLK SATKAFKKHR MRLGDRIHLL EFAAGAYLFF CGCYDIAFGT NHYFLYLFIQ AFAFLIVGFG YVGTFVPNS
001: MSPFLKFFLF LYDYLSPSSF FLVQRNTLGA SLDTTDGVVR SGIIGEIIYI WKQTRIFVFI PILKCLVTIC LVMSLLLFIE RVYMSIVVVF VKLLRRTPEK
101: VHKWEPINDD DLELANTNYP MVLIQIPMYN EKEVCQLSIG AACRLSWPLD RMIVQVLDDS TDPASKELVN AECDKWARKG INIMSEIRDN RIGYKAGALK
201: AGMMHNYVKQ CEFVAIFDAD FQPDPDFLER TIPFLIHNHE ISLVQCRWKF VNANECLMTR MQEMSLNYHF VAEQESGSSI HAFFGFNGTA GVWRIAALNE
301: AGGWKDRTTV EDMDLAVRAC LHGWKFVYVH DVEVKNELPS TFKAYRFQQH RWSCGPANLW RKMTMEILQN KKVSAWKKLY LIYNFFFIRK IVVHIFTFVF
401: YCLILPTTVL FPELQVPKWA TVYFPTTITI LNAIATPRSL HLLVFWILFE NVMSMHRTKA TFIGLLEAGR VNEWVVTEKL GDTLKSKLIG KATTKLYTRF
501: GQRLNWRELV VGLYIFFCGC YDFAYGGSYF YVYLFLQSCA FFVAGVGYIG TFVPTV
101: VHKWEPINDD DLELANTNYP MVLIQIPMYN EKEVCQLSIG AACRLSWPLD RMIVQVLDDS TDPASKELVN AECDKWARKG INIMSEIRDN RIGYKAGALK
201: AGMMHNYVKQ CEFVAIFDAD FQPDPDFLER TIPFLIHNHE ISLVQCRWKF VNANECLMTR MQEMSLNYHF VAEQESGSSI HAFFGFNGTA GVWRIAALNE
301: AGGWKDRTTV EDMDLAVRAC LHGWKFVYVH DVEVKNELPS TFKAYRFQQH RWSCGPANLW RKMTMEILQN KKVSAWKKLY LIYNFFFIRK IVVHIFTFVF
401: YCLILPTTVL FPELQVPKWA TVYFPTTITI LNAIATPRSL HLLVFWILFE NVMSMHRTKA TFIGLLEAGR VNEWVVTEKL GDTLKSKLIG KATTKLYTRF
501: GQRLNWRELV VGLYIFFCGC YDFAYGGSYF YVYLFLQSCA FFVAGVGYIG TFVPTV
Arabidopsis Description
CSLA3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q7B4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.