CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39574
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03760.1	KRH39574	AT1G32230.1	19548978
AT5G03760.1	KRH74370	AT1G32230.1	19548978
AT5G03760.1	KRH74373	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67832	Soybean	plasma membrane	98.69	98.69
KRH32645	Soybean	plasma membrane	81.43	84.93
KRH20021	Soybean	plasma membrane	81.24	84.74
Solyc09g009010.2.1	Tomato	cytosol, peroxisome, plasma membrane	47.47	84.62
Solyc10g083670.1.1	Tomato	plasma membrane	84.24	84.24
PGSC0003DMT400072644	Potato	plasma membrane	84.24	84.24
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.86	82.78
CDX70286	Canola	plasma membrane	82.55	82.71
GSMUA_Achr10P...	Banana	plasma membrane	81.61	82.7
Bra009512.1-P	Field mustard	plasma membrane	82.18	82.33
CDY10358	Canola	plasma membrane	82.18	82.33
CDY11268	Canola	plasma membrane	81.99	82.14
PGSC0003DMT400007050	Potato	mitochondrion	81.8	81.8
Bra005779.1-P	Field mustard	plasma membrane	81.61	81.77
AT5G03760.1	Thale cress	plasma membrane	80.3	80.3
GSMUA_Achr10P...	Banana	plasma membrane	80.3	80.3
KRG92056	Soybean	plasma membrane	78.99	79.58
KRH34719	Soybean	plasma membrane	78.99	79.58
GSMUA_Achr6P13400_001	Banana	plasma membrane	80.49	79.15
GSMUA_Achr2P20260_001	Banana	plasma membrane	78.99	78.99
KRH22736	Soybean	plasma membrane	70.17	70.17
CDX80885	Canola	plasma membrane	68.86	69.9
KRH25159	Soybean	endoplasmic reticulum	70.54	69.24
KRH30518	Soybean	endoplasmic reticulum	70.36	69.19
GSMUA_Achr5P15920_001	Banana	plasma membrane	76.74	68.17
KRH67729	Soybean	plasma membrane	64.73	65.46
KRG96022	Soybean	plasma membrane	64.35	64.96
KRH55858	Soybean	cytosol	11.82	55.26
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	43.9	35.45
KRG93391	Soybean	plasma membrane	43.53	35.15
KRH61950	Soybean	plasma membrane	44.47	34.2
KRH52609	Soybean	plasma membrane	44.28	34.05
KRH15467	Soybean	plasma membrane	44.47	33.91
KRH07420	Soybean	plasma membrane	44.28	33.81
KRH04930	Soybean	plasma membrane	43.9	33.77
KRH16165	Soybean	plasma membrane	43.9	33.77
KRH44638	Soybean	cytosol	44.09	33.72
KRH47014	Soybean	cytosol, golgi, peroxisome, plastid	43.53	33.53
KRH52142	Soybean	plasma membrane	44.09	33.29
KRH61452	Soybean	plasma membrane	44.09	33.19
KRH66156	Soybean	endoplasmic reticulum	43.9	33.1
KRH57821	Soybean	plasma membrane	6.75	14.94

Protein Annotations

EMBL:ACUP02012146	EnsemblPlants:KRG96119	EnsemblPlantsGene:GLYMA_19G190600	EntrezGene:100782772	Gene3D:3.90.550.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF10
PFAM:PF13641	ProteinID:KRG96119	ProteinID:KRG96119.1	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI000233F5E9	UniProt:I1NAI2	MapMan:21.2.3.1.1.1	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:44818393..44823890

Molecular Weight (calculated)

61253.5 Da

IEP (calculated)

9.203

GRAVY (calculated)

0.158

Length

533 amino acids

Sequence
(BLAST)

001: MDRFSSSTIL PEAFQGAKDD FTMQLALVWN QIKAPLIVPL LRLAVFLCLI MSVMMFIERV YMGIVITLVK LFGRKPEKRY KWEPMKDDIE LGNSCYPMVL
101: VQVPMYNERE VYQLSIGAAC GLSWPSDRII IQVLDDSTDP TIKELVQLEC QRWASKGVNI KYEVRDNRNG YKAGALKEGM KRSYVKQCDC VAIFDADFQP
201: EPDFLWRTVP FLVHNPELAL IQARWKFVNA DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGVW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLSDLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM VMEIINNKKV SLWKKIHVIY SFFFVRKVVA HINTFVFYCI VLPATVLVPE VVVPKWGAVY
401: IPSIITILNA VGTPRSLHLM VFWILFENVM SLHRTKATII GLLEASRVNE WVVTEKLGDA LKTKAGGKAP KKPRFRIGDR IHLLELGVAF YLFFCGCYDI
501: MFGKNHFFIF LFIQSLAFLI MAFGYVGTIV PNS

Best Arabidopsis Sequence Match ( AT5G03760.1 )
(BLAST)

001: MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL
101: IQIPMFNERE VYQLSIGAAC GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM KKSYVKSCDY VAIFDADFQP
201: EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG
301: WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY
401: IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA
501: FFGKNHYYLY LFAQAIAFFI AGFGQIGTIV PNH

Arabidopsis Description

CSLA9RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.