CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30518	Soybean	endoplasmic reticulum	98.71	98.89
KRH22736	Soybean	plasma membrane	85.45	87.05
CDX88785	Canola	plasma membrane	77.53	82.55
Bra006633.1-P	Field mustard	plasma membrane	77.35	82.35
CDX71011	Canola	plasma membrane	77.35	82.35
CDY26949	Canola	plasma membrane	77.35	82.35
CDY35710	Canola	plasma membrane	77.35	82.19
CDY09164	Canola	plasma membrane	76.8	81.76
AT5G22740.1	Thale cress	plasma membrane	80.29	81.65
Bra020212.1-P	Field mustard	plasma membrane	79.74	81.09
VIT_06s0061g01230.t01	Wine grape	plasma membrane	76.24	77.67
PGSC0003DMT400068221	Potato	plasma membrane	74.4	77.1
Solyc11g066820.1.1	Tomato	plasma membrane	74.4	77.1
Solyc06g074630.2.1	Tomato	plasma membrane	75.32	76.74
PGSC0003DMT400018425	Potato	plasma membrane	75.14	76.55
KRG96119	Soybean	plasma membrane	69.24	70.54
TraesCS6B01G197200.1	Wheat	plasma membrane	66.85	70.08
TraesCS6A01G169200.1	Wheat	plasma membrane	66.85	70.08
TraesCS6D01G158600.1	Wheat	plasma membrane	66.85	70.08
HORVU6Hr1G034630.10	Barley	plasma membrane	66.85	70.08
Os02t0192500-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	67.03	69.87
KRH67832	Soybean	plasma membrane	68.51	69.79
KRG92056	Soybean	plasma membrane	67.96	69.75
KRH34719	Soybean	plasma membrane	67.77	69.57
EES06436	Sorghum	plasma membrane	65.93	68.71
KRH20021	Soybean	plasma membrane	64.09	68.1
KRH32645	Soybean	plasma membrane	64.09	68.1
Zm00001d053696_P003	Maize	plasma membrane	66.11	63.2
KRH67729	Soybean	plasma membrane	56.35	58.06
KRG96022	Soybean	plasma membrane	55.62	57.2
KRH55858	Soybean	cytosol	10.5	50.0
Bra002426.1-P	Field mustard	plasma membrane	79.93	44.79
CDX92340	Canola	plasma membrane	77.16	44.34
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	41.25	33.94
KRG93391	Soybean	plasma membrane	41.07	33.79
KRH44638	Soybean	cytosol	41.8	32.57
KRH16165	Soybean	plasma membrane	41.25	32.32
KRH61950	Soybean	plasma membrane	41.25	32.32
KRH52609	Soybean	plasma membrane	41.25	32.32
KRH47014	Soybean	cytosol, golgi, peroxisome, plastid	41.07	32.23
KRH15467	Soybean	plasma membrane	41.44	32.19
KRH04930	Soybean	plasma membrane	41.07	32.18
KRH52142	Soybean	plasma membrane	41.44	31.87
KRH07420	Soybean	plasma membrane	40.88	31.81
KRH61452	Soybean	plasma membrane	41.44	31.78
KRH66156	Soybean	endoplasmic reticulum	40.52	31.12
KRH57821	Soybean	plasma membrane	5.71	12.86

Protein Annotations

EMBL:ACUP02007217	EnsemblPlants:KRH25159	EnsemblPlantsGene:GLYMA_12G084600	EntrezGene:100791645	Gene3D:3.90.550.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF17
PFAM:PF13641	ProteinID:KRH25159	ProteinID:KRH25159.1	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000233D8A3
UniProt:I1LRC1	MapMan:21.2.3.1.1.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:6827448..6833505

Molecular Weight (calculated)

62527.7 Da

IEP (calculated)

9.477

GRAVY (calculated)

0.114

Length

543 amino acids

Sequence
(BLAST)

001: MVESQPKFFI PDSINGVNFD VAAQIKMVWE VIKAPLIVPL LNLAVYISLA MALMLFMERV YMGIVIILVK LFWKKPHQRY KFEPLQDDEE LGNSNYPVVL
101: VQIPMFNEKE VYKVSIGAAC NLSWPVDRLV IQVLDDSTDP TIKQMVEMEC NRWASKGINI VYQIRETRGG YKAGALKEGL KRNYVKHCEY VAIFDADFRP
201: EPDFLRRSIP FLVGNPDIAL VQARWRFVNS DECLLTRMQE MSLDYHFTVE QEVGSATHAF FGFNGTAGIW RIAAINEAGG WKDRTTVEDM DLAVRASLRG
301: WKFLYLGDLQ AKSELPSTLR AFRFQQHRWS CGPANLFRKM VMEIVRNKKV KFWKKVYVIY SFFFVRKIIA HMVTFFFYCV VIPLTILVPE VHVPIWGAVY
401: IPSVITILNS VGTPRSIHLL FYWILFENVM SLHRTKATFI GLLEYGRANE WVVTEKLGDS VNNNNKNKSG DAAKKNNAIK ATPKKTRSKF VERLNLLELG
501: FAVFLFVCGC YDYVHGKHNY FIYLFLQTLT FSIVGFGYVG TIV

Best Arabidopsis Sequence Match ( AT5G22740.1 )
(BLAST)

001: MDGVSPKFVL PETFDGVRME ITGQLGMIWE LVKAPVIVPL LQLAVYICLL MSVMLLCERV YMGIVIVLVK LFWKKPDKRY KFEPIHDDEE LGSSNFPVVL
101: VQIPMFNERE VYKLSIGAAC GLSWPSDRLV IQVLDDSTDP TVKQMVEVEC QRWASKGINI RYQIRENRVG YKAGALKEGL KRSYVKHCEY VVIFDADFQP
201: EPDFLRRSIP FLMHNPNIAL VQARWRFVNS DECLLTRMQE MSLDYHFTVE QEVGSSTHAF FGFNGTAGIW RIAAINEAGG WKDRTTVEDM DLAVRASLRG
301: WKFLYLGDLQ VKSELPSTFR AFRFQQHRWS CGPANLFRKM VMEIVRNKKV RFWKKVYVIY SFFFVRKIIA HWVTFCFYCV VLPLTILVPE VKVPIWGSVY
401: IPSIITILNS VGTPRSIHLL FYWILFENVM SLHRTKATLI GLFEAGRANE WVVTAKLGSG QSAKGNTKGI KRFPRIFKLP DRLNTLELGF AAFLFVCGCY
501: DFVHGKNNYF IYLFLQTMSF FISGLGWIGT YVPS

Arabidopsis Description

CSLA2Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PUD8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.