Factsheet for VIT_04s0069g00780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 3
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31590.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61950	Soybean	plasma membrane	85.88	86.0
KRH52609	Soybean	plasma membrane	85.59	85.71
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	84.29	84.42
AT4G31590.1	Thale cress	plasma membrane	81.99	82.23
Bra023993.1-P	Field mustard	plasma membrane	78.67	82.11
CDY13445	Canola	plasma membrane	81.27	82.1
CDX72314	Canola	plasma membrane	80.55	81.73
KRH16165	Soybean	plasma membrane	81.41	81.53
Solyc08g006310.2.1	Tomato	golgi, peroxisome, plasma membrane	80.84	80.84
KRH04930	Soybean	plasma membrane	80.69	80.81
PGSC0003DMT400024646	Potato	golgi, peroxisome, plasma membrane	80.69	80.69
AT2G24630.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	79.83	80.29
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	78.82	79.97
Bra007838.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	75.79	79.7
CDX76802	Canola	plasma membrane	75.65	79.55
Os08t0253800-01	Rice	cytosol, peroxisome, plasma membrane	54.32	78.71
CDX68766	Canola	plasma membrane	81.7	73.16
VIT_14s0066g01730.t01	Wine grape	plasma membrane	69.45	72.59
CDY57881	Canola	extracellular	12.82	71.2
KRH57821	Soybean	plasma membrane	24.5	70.54
HORVU3Hr1G000340.2	Barley	plasma membrane	61.53	66.1
VIT_18s0001g08580.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.14	65.67
Zm00001d024178_P002	Maize	cytosol, peroxisome, plasma membrane	70.89	64.99
Zm00001d049336_P001	Maize	plasma membrane	71.33	64.79
TraesCS3B01G000600.1	Wheat	cytosol, peroxisome, plasma membrane	70.03	64.71
CDY60854	Canola	plasma membrane	81.56	64.69
TraesCSU01G038900.1	Wheat	cytosol, peroxisome, plasma membrane	69.88	64.67
KXG24822	Sorghum	peroxisome	70.46	64.34
TraesCS3D01G010500.1	Wheat	cytosol, peroxisome, plasma membrane	69.74	63.85
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	63.54	58.57
Bra011284.1-P	Field mustard	plasma membrane	81.41	58.19
VIT_13s0074g00500.t01	Wine grape	plasma membrane	29.97	46.33
VIT_08s0040g01340.t01	Wine grape	extracellular, plasma membrane	30.69	44.38
VIT_06s0061g01230.t01	Wine grape	plasma membrane	32.85	42.78
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	33.0	42.41

Protein Annotations

EntrezGene:100245256	wikigene:100245256	MapMan:21.2.1.1.1	Gene3D:3.90.550.10	UniProt:A5BPE5	EMBL:AM466530
ProteinID:CAN83466	ProteinID:CAN83466.1	ProteinID:CCB48869	ProteinID:CCB48869.1	EMBL:FN595500	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044	EntrezGene:LOC100245256	wikigene:LOC100245256	InterPro:Nucleotide-diphossugar_trans
PFAM:PF13641	PANTHER:PTHR32044	PANTHER:PTHR32044:SF7	SUPFAM:SSF53448	TIGR:TC54197	TMHMM:TMhelix
UniParc:UPI0001524933	ArrayExpress:VIT_04s0069g00780	EnsemblPlantsGene:VIT_04s0069g00780	EnsemblPlants:VIT_04s0069g00780.t01	unigene:Vvi.8274	RefSeq:XP_002271933
RefSeq:XP_002271933.1	RefSeq:XP_010648837.1	RefSeq:XP_019075111.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:8878850..8882164

Molecular Weight (calculated)

79395.3 Da

IEP (calculated)

8.827

GRAVY (calculated)

0.103

Length

694 amino acids

Sequence
(BLAST)

001: MAPRLDFSDL WGKDTRKGTP VVVTMENPNY SVVEIDGPDS AFRPVEKSRG KNAKQVTWVL LLKAHRAVGC VAWLATVLWA LLGTIKKRLI FRQGVAMESE
101: KTGKGKLLFR IIKVFLVTSL AILSFEVVAY LKGWHYFRNP NLHIPRTSDF QGLLHMVYVA WLTLRADYIA PLIQALSKFC VALFLIQSAD RMVLCLGCLW
201: IKYKKIKPRI DGDPFKLEDV EGSGYEYPMV LVQIPMCNER EVYEQSISAV CQIDWPKDRL LIQVLDDSDD ESIQCLIKAE VYNWSQQGIN IVYRHRLVRT
301: GYKAGNLKSA MSCDYVKNYE FVAIFDADFQ PNPDFLKQTV PHFQGNPDLG LVQARWAFVN KDENLLTRLQ NINLCFHFEV EQQVNGVFLN FFGFNGTAGV
401: WRIKALEDSG GWLERTTVED MDIAVRAHLN GWKFIFLNDV KVLCEVPESY EAYRKQQHRW HSGPMQLFRL CLPAVITSKI SIWKKANMLL LFFLLRKLIL
501: PFYSFTLFCI ILPLTMFVPE AELPVWVICY VPVFMSFLNI LPAPKSFPFI VPYLLFENTM SVTKFNAMVS GLFQLGSSYE WIVTKKAGRA SESDLLAAAE
601: RDSKTVNQPL IHRGASESEL SELNRLKEQK ESTPPAVKKI NKIYRKELTL AFLLLTASVR SLLASQGVHF YFLLFQGVTF LLVGLDLIGE QMSQ

Best Arabidopsis Sequence Match ( AT4G31590.1 )
(BLAST)

001: MAPRLDFSDW WAKDTRKGTP VVVKMENPNY SVVEIDGPDS AFRPVEKSRG KNAKQVTWVL LLKAHRAVGC LTWLATVFWS LLGAIKKRLS FTHPLGSEKL
101: GRDRWLFTAI KLFLAVSLVI LGFEIVAYFR GWHYFQSPSL HIPTSTLEIQ SLFHLVYVGW LTLRADYIAP PIKALSKFCI VLFLIQSVDR LVLCLGCFWI
201: KYKKIKPRFD EEPFRNDDAE GSGSEYPMVL VQIPMCNERE VYEQSISAVC QLDWPKDRIL VQVLDDSNDE SIQQLIKAEV AKWSQKGVNI IYRHRLVRTG
301: YKAGNLKSAM SCDYVEAYEY VAIFDADFQP TPDFLKLTVP HFKDNPELGL VQARWTFVNK DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW
401: RIKALEESGG WLERTTVEDM DIAVRAHLHG WKFIYLNDVK VLCEVPESYE AYKKQQHRWH SGPMQLFRLC LGSILTSKIA IWKKANLILL FFLLRKLILP
501: FYSFTLFCII LPLTMFVPEA ELPVWVICYI PVFMSFLNLL PSPKSFPFIV PYLLFENTMS VTKFNAMVSG LFQLGSSYEW IVTKKAGRSS ESDLLSITEK
601: ETPTKKSQLL RGVSDSELLE LSQLEEQKQA VSKKPVKKTN KIYHKELALA FLLLTAALRS LLAAQGVHFY FLLFQGVTFL LVGLDLIGEQ MS

Arabidopsis Description

CSLC5CSLC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UYZ0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.