Factsheet for VIT_14s0066g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plastid 2
endoplasmic reticulum 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01730.t01	golgi
VIT_17s0000g06590.t01	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	VIT_17s0000g06590.t01	AT1G74380.1	22665445
AT3G28180.1	VIT_14s0066g01730.t01	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00138	Canola	cytosol, peroxisome, plasma membrane	57.38	83.37
CDY04011	Canola	cytosol, peroxisome, plasma membrane	57.23	83.15
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	79.97	80.45
KRG93391	Soybean	plasma membrane	78.92	79.39
Solyc02g089640.2.1	Tomato	plasma membrane	76.51	77.68
CDX85189	Canola	plasma membrane	76.81	77.63
CDX86448	Canola	plasma membrane	76.66	77.47
PGSC0003DMT400026046	Potato	plasma membrane	76.05	77.22
AT3G28180.1	Thale cress	plasma membrane	77.71	76.67
CDY20029	Canola	plasma membrane	75.45	76.14
Bra039061.1-P	Field mustard	plasma membrane	76.96	75.59
Bra025323.1-P	Field mustard	plasma membrane	76.51	75.26
VIT_09s0018g01950.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	72.74	69.7
VIT_04s0069g00780.t01	Wine grape	plasma membrane	72.59	69.45
CDY47235	Canola	plasma membrane	33.89	69.02
Bra033039.1-P	Field mustard	plasma membrane	33.89	69.02
VIT_18s0001g08580.t01	Wine grape	cytosol, peroxisome, plasma membrane	67.17	63.81
VIT_00s0580g00010.t01	Wine grape	plasma membrane, plastid	64.01	56.44
VIT_13s0074g00500.t01	Wine grape	plasma membrane	32.38	47.88
VIT_06s0061g01230.t01	Wine grape	plasma membrane	35.39	44.09
VIT_08s0040g01340.t01	Wine grape	extracellular, plasma membrane	31.78	43.96
VIT_08s0007g03990.t01	Wine grape	cytosol, peroxisome, plasma membrane	34.79	42.78

Protein Annotations

EntrezGene:100244115	wikigene:100244115	MapMan:21.2.1.1.1	Gene3D:3.90.550.10	ProteinID:CCB58538	ProteinID:CCB58538.1
UniProt:F6HV20	EMBL:FN596252	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802
GO:GO:0005886	GO:GO:0016020	GO:GO:0016021	GO:GO:0042803	InterPro:Glyco_trans_2-like	InterPro:IPR029044
EntrezGene:LOC100244115	wikigene:LOC100244115	InterPro:Nucleotide-diphossugar_trans	PFAM:PF13632	PANTHER:PTHR32044	PANTHER:PTHR32044:SF11
SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI00015C9587	ArrayExpress:VIT_14s0066g01730	EnsemblPlantsGene:VIT_14s0066g01730	EnsemblPlants:VIT_14s0066g01730.t01
unigene:Vvi.20094	RefSeq:XP_002280124	RefSeq:XP_002280124.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:28069279..28071699

Molecular Weight (calculated)

76510.1 Da

IEP (calculated)

9.116

GRAVY (calculated)

0.125

Length

664 amino acids

Sequence
(BLAST)

001: MAPSSVVLTI EKPSNFSLVE ITGSKTSMFP EKEKAASPKQ FTWVLLLKVH RALACLSWLA TGAWTVFVAA KKRLALSEIK EEEPTNRGRL YRFIRAFVFI
101: SIVALFMEVI AHFKKWNLNL IQPLEVQGLV QWSYMAWLSF RVDYIAPLVL ILSKFCIVLF LIQSLDRLFL CFGCFWIKHK KLKPEMDADA YDIEDGSSFP
201: MVLVQIPMCN EKEVYAQSIS AVCQLDWPRE RLLIQVLDDS DDENVQLLIK NEVSSWNQKG VNIIYRHRFV RTGYKAGNLK SAMACDYVKD YEFVAIFDAD
301: FQPNPDFLKQ TIPHFKGNPE VGLVQARWSF VNKDENLLTR LQNINLCFHF EVEQQVNGLF LEFFGFNGTA GVWRIKALEE SGGWLERTTV EDMDIAVRAH
401: LHGWKFIFLN DVKVPCELPE SYQAYKKQQH RWHSGPMQLF RLCLPAIVTS KMGIWKKANL IFLFFLLRKL ILPFYSFTLF CIILPLTMFI PEAELPVWVI
501: CYIPIFMSLL NILPAPKSFP FLVPYLLFEN TMSVTKFNAM VSGLFQLGSA YEWVVTKKTG RSSESDLLAM AEKESKSSNQ EKIQRRLSES GLEMLSKVKE
601: QKAPHLKKKK RNRLYRKELA LAFLLLTASA RSLLSAHGVH FYFLLFQGLS FLVVGLDLIG EQMS

Best Arabidopsis Sequence Match ( AT3G28180.1 )
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII
101: ALSIEIVAHF KKWNLDLINR PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK IEPKLTEESI DLEDPSSFPM
201: VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF
301: TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL
401: NGWKFIYLND VEVTCELPES YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC IILPLTMFIP EAELPLWIIC
501: YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG
601: QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF LVVGLDLIGE QIS

Arabidopsis Description

CSLC4Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6R3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.