Factsheet for Bra025323.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
vacuole 1
plasma membrane 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003804.1-P	golgi
Bra008146.1-P	golgi
Bra015915.1-P	golgi
Bra025323.1-P	golgi
Bra033039.1-P	golgi
Bra039061.1-P	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	Bra003804.1-P	AT1G74380.1	22665445
AT3G28180.1	Bra008146.1-P	AT1G74380.1	22665445
AT3G28180.1	Bra015915.1-P	AT1G74380.1	22665445
AT3G28180.1	Bra025323.1-P	AT3G28180.1	22665445
AT3G28180.1	Bra033039.1-P	AT3G28180.1	22665445
AT3G28180.1	Bra039061.1-P	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86448	Canola	plasma membrane	97.19	99.85
Bra039061.1-P	Field mustard	plasma membrane	95.7	95.56
AT3G28180.1	Thale cress	plasma membrane	93.19	93.46
Bra033039.1-P	Field mustard	plasma membrane	44.89	92.94
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	75.7	77.42
KRG93391	Soybean	plasma membrane	75.41	77.12
VIT_14s0066g01730.t01	Wine grape	plasma membrane	75.26	76.51
Solyc02g089640.2.1	Tomato	plasma membrane	72.0	74.31
PGSC0003DMT400026046	Potato	plasma membrane	72.0	74.31
Bra007838.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	65.04	66.52
Bra023993.1-P	Field mustard	plasma membrane	65.04	66.02
Bra000635.1-P	Field mustard	plasma membrane	63.7	62.14
Bra001246.1-P	Field mustard	cytosol, peroxisome, plasma membrane	58.96	56.94
Bra011284.1-P	Field mustard	plasma membrane	67.11	46.65
Bra020212.1-P	Field mustard	plasma membrane	33.63	42.51
Bra008638.1-P	Field mustard	plasma membrane	31.56	42.18
Bra009512.1-P	Field mustard	plasma membrane	33.19	42.11
Bra005779.1-P	Field mustard	plasma membrane	33.19	42.11
Bra006343.1-P	Field mustard	plasma membrane	31.41	42.06
Bra006633.1-P	Field mustard	plasma membrane	31.41	41.57
Bra023020.1-P	Field mustard	plasma membrane	33.63	41.42
Bra024603.1-P	Field mustard	plasma membrane	33.19	40.36
Bra007207.1-P	Field mustard	plasma membrane	30.67	39.58
Bra012702.1-P	Field mustard	plasma membrane	29.48	39.41
Bra012416.1-P	Field mustard	plasma membrane	31.7	39.19
Bra017305.1-P	Field mustard	plasma membrane	33.19	34.89
Bra032705.1-P	Field mustard	plasma membrane	33.78	32.02
Bra002426.1-P	Field mustard	plasma membrane	33.48	23.32

Protein Annotations

EnsemblPlants:Bra025323.1	EnsemblPlants:Bra025323.1-P	EnsemblPlantsGene:Bra025323	Gene3D:3.90.550.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF11	PFAM:PF13641
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000253FBCB	UniProt:M4E967	MapMan:21.2.1.1.1

Description

AT3G28180 (E=0.0) ATCSLC04, CSLC04, ATCSLC4, CSLC4 | ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4); cellulose synthase/ transferase, transferring glycosyl groups

Coordinates

chrA06:-:22166659..22169758

Molecular Weight (calculated)

77501.9 Da

IEP (calculated)

8.386

GRAVY (calculated)

0.071

Length

675 amino acids

Sequence
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DNKRKSISPK QFSWFILLKA HRLVSSLSWL FASVKKRLAF SSKAINEEED PKSRGKQMYR FIKACLVISI
101: VALLIEIVAY YKNWNLDLVN RPSWEVRGLV EWSYVAWLSF RSDYIAPIVI TLSKFCTVLF LIQSLDRLVL CLGCFWIKFK KIEPKLKDDE LDLEDASNFP
201: MVLIQIPMCN EREVYEQSIG AASQLDWPKD RILIQVLDDS DDPNLQLLIK EEVAAWAEKG VNIIYRHRLI RTGYKAGNLK SAMTCDYVKD YEFVTIFDAD
301: FTPSPDFLMK TIPHFKGNPE LGLVQARWSF VNKDENLLTR LQNINLCFHF EVEQQVNGVF LNFFGFNGTA GVWRIKALEE SGGWLERTTV EDMDIAVRAH
401: LNGWKFIYLN DVEVTCELPE SYEAYKKQQH RCHSGPMQLF RLCLPSIIKS KISVGKKANL IFLFFLLRKL ILPFYSFTLF CIILPLTMFI PEAELPLWII
501: CYVPIFISLL NILPSPKSFP FLIPYLLFEN TMSITKFNAM ISGLFQLGSA YEWVVTKKTG RSSESDLLAF AEKEEKLHRR NSESGLELLS KLKEQEMNLA
601: VQETPKKSIG GLVRPSNKIK KRNMVFKKEL GLAFLLLTAA ARSFLSAHGL HFYFLLFQGL SFLVVGLDLI GEQIN

Best Arabidopsis Sequence Match ( AT3G28180.1 )
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII
101: ALSIEIVAHF KKWNLDLINR PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK IEPKLTEESI DLEDPSSFPM
201: VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF
301: TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL
401: NGWKFIYLND VEVTCELPES YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC IILPLTMFIP EAELPLWIIC
501: YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG
601: QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF LVVGLDLIGE QIS

Arabidopsis Description

CSLC4Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6R3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.