CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, endoplasmic reticulum, plasma membrane
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68187	golgi
CDX73082	golgi
CDX85189	golgi
CDX85826	golgi
CDX86448	golgi
CDX96540	golgi
CDY00138	golgi
CDY04011	golgi
CDY20029	golgi
CDY47235	golgi
CDY49114	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28180.1	CDX68187	AT1G74380.1	22665445
AT3G28180.1	CDX73082	AT1G74380.1	22665445
AT3G28180.1	CDX85826	AT1G74380.1	22665445
AT3G28180.1	CDX96540	AT1G74380.1	22665445
AT3G28180.1	CDY49114	AT1G74380.1	22665445
AT3G28180.1	CDX85189	AT3G28180.1	22665445
AT3G28180.1	CDX86448	AT3G28180.1	22665445
AT3G28180.1	CDY00138	AT3G28180.1	22665445
AT3G28180.1	CDY04011	AT3G28180.1	22665445
AT3G28180.1	CDY20029	AT3G28180.1	22665445
AT3G28180.1	CDY47235	AT3G28180.1	22665445

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00138	Canola	cytosol, peroxisome, plasma membrane	69.0	99.34
Bra039061.1-P	Field mustard	plasma membrane	99.7	97.04
CDY04011	Canola	cytosol, peroxisome, plasma membrane	66.26	95.4
CDX85189	Canola	plasma membrane	93.77	93.91
CDX86448	Canola	plasma membrane	93.62	93.76
AT3G28180.1	Thale cress	plasma membrane	93.47	91.38
CDY47235	Canola	plasma membrane	42.86	86.5
KRH18597	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	75.99	75.76
KRG93391	Soybean	plasma membrane	75.68	75.45
VIT_14s0066g01730.t01	Wine grape	plasma membrane	76.14	75.45
Solyc02g089640.2.1	Tomato	plasma membrane	72.8	73.24
PGSC0003DMT400026046	Potato	plasma membrane	72.64	73.09
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	60.33	70.02
CDX76802	Canola	plasma membrane	67.02	66.82
CDX72314	Canola	plasma membrane	69.0	66.37
CDY13445	Canola	plasma membrane	69.0	66.08
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	67.93	65.35
CDY57881	Canola	extracellular	12.16	64.0
CDX83148	Canola	plasma membrane	65.2	61.99
CDX68766	Canola	plasma membrane	68.54	58.19
CDY08003	Canola	cytosol, peroxisome, plasma membrane	60.64	57.41
CDX74051	Canola	cytosol, peroxisome, plasma membrane	60.79	57.22
CDY60854	Canola	plasma membrane	68.54	51.54
CDX75177	Canola	cytosol	22.04	49.83
CDY47369	Canola	plasma membrane	21.12	46.33
CDX69464	Canola	cytosol, peroxisome, plasma membrane	30.4	45.15
CDX70677	Canola	cytosol, peroxisome, plasma membrane	30.24	44.92
CDY09672	Canola	golgi	24.01	44.89
CDY10358	Canola	plasma membrane	34.35	42.48
CDY11268	Canola	plasma membrane	34.35	42.48
CDX70286	Canola	plasma membrane	34.35	42.48
CDY26505	Canola	plasma membrane	32.98	42.3
CDY32110	Canola	mitochondrion	28.27	42.27
CDY01129	Canola	plasma membrane	34.5	42.19
CDX78675	Canola	plasma membrane	32.22	42.06
CDX79614	Canola	plasma membrane	34.95	41.74
CDY35710	Canola	plasma membrane	32.37	41.68
CDY09164	Canola	plasma membrane	32.22	41.57
CDY26949	Canola	plasma membrane	31.91	41.18
CDY32100	Canola	cytosol	1.06	41.18
CDX88785	Canola	plasma membrane	31.91	41.18
CDX71011	Canola	plasma membrane	31.76	40.98
CDY04707	Canola	plasma membrane	34.5	40.9
CDY44151	Canola	plasma membrane	34.5	40.9
CDY32098	Canola	plasma membrane	33.74	40.88
CDX72181	Canola	plasma membrane	31.91	40.15
CDY54604	Canola	plasma membrane	31.91	40.08
CDY40295	Canola	plasma membrane	32.98	39.74
CDY47368	Canola	endoplasmic reticulum, extracellular	3.5	39.66
CDX90506	Canola	plasma membrane	32.52	38.7
CDY68733	Canola	plasma membrane	15.96	38.6
CDY40448	Canola	plasma membrane	34.04	37.84
CDX80885	Canola	plasma membrane	27.96	35.05
CDX84607	Canola	mitochondrion	5.47	30.0
CDX92340	Canola	plasma membrane	32.22	22.43

Protein Annotations

EnsemblPlants:CDY20029	EnsemblPlantsGene:GSBRNA2T00009864001	Gene3D:3.90.550.10	GO:A0A078G3S1	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF11	PFAM:PF13641
ProteinID:CDY20029	ProteinID:CDY20029.1	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EED9D8
UniProt:A0A078G3S1	MapMan:21.2.1.1.1	:	:	:	:

Description

BnaA09g02220DBnaA09g02220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3S1]

Coordinates

chrLK032102:-:506140..509730

Molecular Weight (calculated)

75624.5 Da

IEP (calculated)

8.772

GRAVY (calculated)

0.050

Length

658 amino acids

Sequence
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DNKRKSISPK QFSWFLLLKA HRVVSALSWL LASVKNRIAF SSKNVNEEED PKSRGKQMYR FIKACLVVSI
101: VALSIELVAY YKNWNLDLIN RRPSWEVFGL VEWSYMAWLS FRSDYIAPVV ITLSKFCTVL FLIQSLDRLV LCLGCFWIKL KKIQPKLKDE ELDLEDASNF
201: PMVLIQIPMC NEKEVYEQSI GAAAQLDWPK DRILIQVLDD SDDPNLQLLI KEEVSAWAEK GVNIIYRHRL IRTGYKAGNL KSAMTCDYVK DYEFVTIFDA
301: DFTPSPDFLK KTVPHFKGNP ELGLVQARWS FVNKDENLLT RLQNINLCFH FEVEQQVNGV FLNFFGFNGT AGVWRIKALE ESGGWLERTT VEDMDIAVRA
401: HLNGWKFIYL NDVEVTCELP ESYEAYKKQQ HRWHSGPMQL FRLCLPSIIK SKISAGKKAN LIFLFFLLRK LILPFYSFTL FCIILPLTMF IPEAELPLWI
501: ICYVPIFISL LNILPSPKSF PFLIPYLLFE NTMSITKFNA MISGLFQLGS AYEWVVTKKT GRSSESDLLA FAEKEEKLHR RNSESETPKK TLGGLVRPKN
601: KIKKRNMVFK KELALAFLLL TAAARSFLSA HGLHFYFLLF QGLSFLVVGL DLIGEQIN

Best Arabidopsis Sequence Match ( AT3G28180.1 )
(BLAST)

001: MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII
101: ALSIEIVAHF KKWNLDLINR PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LSRFCTVLFL IQSLDRLVLC LGCFWIKFKK IEPKLTEESI DLEDPSSFPM
201: VLIQIPMCNE REVYEQSIGA ASQLDWPKDR ILIQVLDDSD DPNLQLLIKE EVSVWAEKGV NIIYRHRLIR TGYKAGNLKS AMTCDYVKDY EFVTIFDADF
301: TPNPDFLKKT VPHFKGNPEL GLVQARWSFV NKDENLLTRL QNINLCFHFE VEQQVNGVFL NFFGFNGTAG VWRIKALEES GGWLERTTVE DMDIAVRAHL
401: NGWKFIYLND VEVTCELPES YEAYKKQQHR WHSGPMQLFR LCLPSIIKSK ISVWKKANLI FLFFLLRKLI LPFYSFTLFC IILPLTMFIP EAELPLWIIC
501: YVPIFISLLN ILPSPKSFPF LVPYLLFENT MSITKFNAMI SGLFQFGSAY EWVVTKKTGR SSESDLLAFA EKEEKLHRRN SESGLELLSK LKEQETNLVG
601: QETVKKSLGG LMRPKNKKKT NMVFKKELGL AFLLLTAAAR SFLSAHGLHF YFLLFQGLSF LVVGLDLIGE QIS

Arabidopsis Description

CSLC4Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6R3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.