CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012702.1-P	Field mustard	plasma membrane	90.96	99.6
CDY09672	Canola	golgi	60.4	94.89
AT4G16590.1	Thale cress	endoplasmic reticulum, plasma membrane	84.45	89.81
CDX69464	Canola	cytosol, peroxisome, plasma membrane	58.77	73.36
CDX70677	Canola	cytosol, peroxisome, plasma membrane	58.59	73.14
CDY68733	Canola	plasma membrane	35.44	72.06
CDX78675	Canola	plasma membrane	65.1	71.43
CDY26505	Canola	plasma membrane	65.64	70.76
CDY47369	Canola	plasma membrane	38.16	70.33
CDY40295	Canola	plasma membrane	66.37	67.22
CDY01129	Canola	plasma membrane	62.75	64.5
CDY44151	Canola	plasma membrane	60.76	60.54
CDY04707	Canola	plasma membrane	60.4	60.18
CDY11268	Canola	plasma membrane	55.7	57.89
CDX72181	Canola	plasma membrane	54.61	57.74
CDY10358	Canola	plasma membrane	55.33	57.52
CDX70286	Canola	plasma membrane	55.33	57.52
CDY54604	Canola	plasma membrane	54.25	57.25
CDX88785	Canola	plasma membrane	50.45	54.71
CDY35710	Canola	plasma membrane	50.45	54.6
CDY09164	Canola	plasma membrane	50.27	54.51
CDY26949	Canola	plasma membrane	50.27	54.51
CDX71011	Canola	plasma membrane	50.27	54.51
CDY32098	Canola	plasma membrane	53.16	54.14
CDX79614	Canola	plasma membrane	53.16	53.36
CDY32110	Canola	mitochondrion	42.31	53.18
CDY40448	Canola	plasma membrane	53.35	49.83
CDX80885	Canola	plasma membrane	47.02	49.52
CDY47368	Canola	endoplasmic reticulum, extracellular	4.88	46.55
CDX84607	Canola	mitochondrion	9.4	43.33
CDY04011	Canola	cytosol, peroxisome, plasma membrane	35.26	42.67
CDY00138	Canola	cytosol, peroxisome, plasma membrane	34.54	41.79
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	38.7	37.74
CDY32100	Canola	cytosol	1.08	35.29
CDY20029	Canola	plasma membrane	38.7	32.52
CDX86448	Canola	plasma membrane	38.34	32.27
CDX85189	Canola	plasma membrane	38.34	32.27
CDX76802	Canola	plasma membrane	38.16	31.97
CDX83148	Canola	plasma membrane	39.24	31.36
CDY57881	Canola	extracellular	7.05	31.2
CDX72314	Canola	plasma membrane	38.52	31.14
CDY13445	Canola	plasma membrane	38.16	30.71
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	37.97	30.7
CDY08003	Canola	cytosol, peroxisome, plasma membrane	38.16	30.36
CDX74051	Canola	cytosol, peroxisome, plasma membrane	38.16	30.19
CDX92340	Canola	plasma membrane	50.45	29.52
CDX68766	Canola	plasma membrane	38.34	27.35
CDX75177	Canola	cytosol	13.38	25.43
CDY60854	Canola	plasma membrane	38.34	24.23
CDY47235	Canola	plasma membrane	10.85	18.4

Protein Annotations

EnsemblPlants:CDX90506	EnsemblPlantsGene:GSBRNA2T00151131001	Gene3D:3.90.550.10	GO:A0A078DMP2	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
ncoils:Coil	PANTHER:PTHR32044	PANTHER:PTHR32044:SF21	PFAM:PF13641	ProteinID:CDX90506	ProteinID:CDX90506.1
SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EE1493	MapMan:21.2.3.1.1.1	:

Description

BnaA03g42750D

Coordinates

chrLK031863:-:598706..603908

Molecular Weight (calculated)

64377.7 Da

IEP (calculated)

9.088

GRAVY (calculated)

0.120

Length

553 amino acids

Sequence
(BLAST)

001: MSLYLKPFLF LYDSTLSLLL LLFNGWSLED SATAHERLEA DNNAAESEWM QIQYLWRKTR SLVLLPVFKG LVIMCLVLSI IVFFESFYMN IVIFFGKLLR
101: RKPEKLYKWE AMQEDVEAGS ENYPKVLVQI PMYNEKEVFQ ISIAAVCSLL WPSSRLVIQV VDDSTDPVVR EGVDIEIAKW QSQGINIRCE RRDNRNGYKA
201: GAMKEALTHN YVKQCDFVAV FDADFQPDPD YLARTIPFLV HNPDVALVQA RWIFVNANKC LMTRMQEMSL NYHFKVEQES GFTRHAFFGF NGTAGVWRIS
301: AMDAAGGWKS RTTVEDMDLA VRVGLHGWKF VYLNDLTVRN ELPSKFKAYR FQQHRWSCGP ANLFRKMTME IIYNKRVSIW KKFYVIYSFF FVRKVAVHFL
401: TFFFYCIIVP TSVFFPEIHI PLWSTIYVPS MISIFHTMAT PRSFYLVIIW ILFENVMAMH RTKGTWIGLL EGGRVNEWVV TEKLGDALKN KLLSKVVQKK
501: SYYERVNSKE VMVGIYILGC ALYGVINGHT WLHFYLFLQA TAYFVSGFGY IGT

Best Arabidopsis Sequence Match ( AT4G16590.1 )
(BLAST)

001: MSLFLKPFLF LYDTTLSLLL LLFNGWSLED TAAAQKRREA DKNAAETEWI QLQYLWTKTR SVVLLPVFKG LVVMCLVLSI IVFFESFYMN FVILFVKLFK
101: RKPHKVYKWE AMQEDVEVGP DNYPMVLIQI PMYNEKEEGV DVEIAKWQSQ GINIRCERRD NRNGYKAGAM KEALTQSYVK QCDFVAVFDA DFQPEPDYLI
201: RAVPFLVHNP DVALVQARWI FVNANKCLMT RMQEMSLNYH FKVEQESGST RHAFFGFNGT AGVWRISAME AAGGWKSRTT VEDMDLAVRV GLHGWKFVYL
301: NDLTVRNELP SKFKAYRFQQ HRWSCGPANL FRKMTMEIIF NKRVSIWKKF YVIYSFFFVR KVAVHFLTFF FYCIIVPTSV FFPEIHIPSW STIYVPSLIS
401: IFHTLATPRS FYLVIFWVLF ENVMAMHRTK GTCIGLLEGG RVNEWVVTEK LGDALKSKLL SRVVQRKSCY QRVNSKEVMV GVYILGCALY GLIYGHTWLH
501: FYLFLQATAF FVSGFGFVGT

Arabidopsis Description

ATCSLA01cellulose synthase-like A01 [Source:TAIR;Acc:AT4G16590]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.