CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84607	Canola	mitochondrion	21.14	77.5
CDY32098	Canola	plasma membrane	88.41	71.64
CDX79614	Canola	plasma membrane	83.18	66.42
CDY40448	Canola	plasma membrane	88.86	66.05
AT2G35650.1	Thale cress	plasma membrane	83.41	66.01
CDY47369	Canola	plasma membrane	40.68	59.67
CDY68733	Canola	plasma membrane	36.14	58.46
CDX69464	Canola	cytosol, peroxisome, plasma membrane	56.36	55.98
CDX70677	Canola	cytosol, peroxisome, plasma membrane	55.23	54.85
CDY10358	Canola	plasma membrane	62.27	51.5
CDX70286	Canola	plasma membrane	62.05	51.32
CDY11268	Canola	plasma membrane	62.05	51.32
CDX78675	Canola	plasma membrane	55.91	48.81
CDY26505	Canola	plasma membrane	56.82	48.73
CDY54604	Canola	plasma membrane	57.5	48.28
CDX72181	Canola	plasma membrane	57.27	48.18
CDY44151	Canola	plasma membrane	58.86	46.67
CDY04707	Canola	plasma membrane	58.64	46.49
CDY35710	Canola	plasma membrane	53.18	45.79
CDY09164	Canola	plasma membrane	52.73	45.49
CDY40295	Canola	plasma membrane	56.36	45.42
CDY26949	Canola	plasma membrane	52.5	45.29
CDX88785	Canola	plasma membrane	52.27	45.1
CDX71011	Canola	plasma membrane	52.05	44.9
CDY01129	Canola	plasma membrane	54.77	44.8
CDX80885	Canola	plasma membrane	50.68	42.48
CDX90506	Canola	plasma membrane	53.18	42.31
CDY09672	Canola	golgi	33.64	42.05
CDY04011	Canola	cytosol, peroxisome, plasma membrane	41.36	39.82
CDY00138	Canola	cytosol, peroxisome, plasma membrane	41.14	39.61
CDY47368	Canola	endoplasmic reticulum, extracellular	4.77	36.21
CDY57881	Canola	extracellular	10.23	36.0
CDY34018	Canola	cytosol, endoplasmic reticulum, plasma membrane	41.36	32.1
CDX85189	Canola	plasma membrane	42.27	28.31
CDX86448	Canola	plasma membrane	42.27	28.31
CDY20029	Canola	plasma membrane	42.27	28.27
CDX76802	Canola	plasma membrane	41.82	27.88
CDY34762	Canola	endoplasmic reticulum, peroxisome, plasma membrane	41.59	26.75
CDX72314	Canola	plasma membrane	41.36	26.61
CDY13445	Canola	plasma membrane	41.14	26.35
CDX83148	Canola	plasma membrane	41.36	26.3
CDY08003	Canola	cytosol, peroxisome, plasma membrane	40.68	25.76
CDX74051	Canola	cytosol, peroxisome, plasma membrane	40.45	25.46
CDX92340	Canola	plasma membrane	52.27	24.34
CDY32100	Canola	cytosol	0.91	23.53
CDX68766	Canola	plasma membrane	41.14	23.35
CDX75177	Canola	cytosol	15.23	23.02
CDY60854	Canola	plasma membrane	41.14	20.69
CDY47235	Canola	plasma membrane	12.73	17.18

Protein Annotations

EnsemblPlants:CDY32110	EnsemblPlantsGene:GSBRNA2T00051467001	Gene3D:3.90.550.10	GO:A0A078H0B2	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Glyco_trans_2-like	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR32044	PANTHER:PTHR32044:SF21
PFAM:PF13632	ProteinID:CDY32110	ProteinID:CDY32110.1	SEG:seg	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0004EF0B84	UniProt:A0A078H0B2	MapMan:21.2.3.1.1.1	:	:	:

Description

BnaC04g44560DBnaC04g44560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0B2]

Coordinates

chrLK032287:-:343239..345158

Molecular Weight (calculated)

50871.4 Da

IEP (calculated)

8.800

GRAVY (calculated)

0.152

Length

440 amino acids

Sequence
(BLAST)

001: MFSCSVWSLC KYICTMKKRI SWPTNRIIIQ VLDDSTDPAS KELVRRECER WSTEGVTITF EIRDNMNGYK AGAPREGMKH SYVKQCDYIA IFDADFQPDP
101: DFLHRTVPFL IYNPKRALVQ GRWEFVNGDQ CMMTRLQEMS LSYHFTVEQQ VGSSTFAFFG FNGTAGVWRI SALNESGGWN DQTTVEDMDI AVRATLRGWK
201: LLYIDDLKVK SELPCSFNAL RSQQHRWTCC PANLFRKMAG PTIKSENVSL WKKLYMLYSF FFMRKVVAHI LTFCFYCVIL PAIVLFPEIT VPKWAAFYLP
301: ALITLFIAIG KPRSVYLLVF WVLFENAMSM LRTKALVMGL FETGRVQEWV MTEKLGDALK TKLIGQVANE HHVRFRDRVH LLELLLGVYL LFCGCYDIIY
401: GKNTLYLYVY LLLQSTAFFV VGFGFVGKFV PASCFLLSHR

Best Arabidopsis Sequence Match ( AT2G35650.3 )
(BLAST)

001: MIPRIQPELV KKECDRWSKE GVNITFEIRD NRNGYKAGAL REGMRHSYVK QCDYVAIFDA DFQPDPDFLH RTVPFLIHNP KLALVQGRWE FVNAGQCMMT
101: RLQEMSLSYH FTIEQQVGSS TFAFFGFNGT AGVWRISALN ESGGWNDQTT VEDMDLAVRA TLRGWKFLYI DDLKVKSELP CSFKALRSQQ HRWTCGPANL
201: LRKMAGQIIR SENVSLWKKW YMLYSFFFMR KIVAHILTFC FYCVILPATV LFPEVTVPKW AAFYLPSLIT LLIAIGRLRS IHLLAFWVLF ENAMSLLRAK
301: ALVMGLFETG RVQEWVVTEK LGDTLKTKLI PQVPNVRFRE RVHLLELLVG AYLLFCGIYD IVYGKNTLYV YLLFQSVAFF VVGFGFVGKY VPASSYLA

Arabidopsis Description

CSLA7Probable mannan synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQN8]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.